General information for g13843.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g13843 is located on chr_1: 32760780..32761899 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13843 | g13843.t4 | TSS | g13843.t4 | 32754259 | 32754259 |
| chr_1 | g13843 | g13843.t4 | isoform | g13843.t4 | 32754515 | 32758017 |
| chr_1 | g13843 | g13843.t4 | exon | g13843.t4.exon1 | 32754515 | 32754626 |
| chr_1 | g13843 | g13843.t4 | cds | g13843.t4.CDS1 | 32754515 | 32754626 |
| chr_1 | g13843 | g13843.t4 | exon | g13843.t4.exon2 | 32755440 | 32755568 |
| chr_1 | g13843 | g13843.t4 | cds | g13843.t4.CDS2 | 32755440 | 32755568 |
| chr_1 | g13843 | g13843.t4 | exon | g13843.t4.exon3 | 32757402 | 32757575 |
| chr_1 | g13843 | g13843.t4 | cds | g13843.t4.CDS3 | 32757402 | 32757575 |
| chr_1 | g13843 | g13843.t4 | exon | g13843.t4.exon4 | 32757634 | 32758017 |
| chr_1 | g13843 | g13843.t4 | cds | g13843.t4.CDS4 | 32757634 | 32757869 |
| chr_1 | g13843 | g13843.t4 | TTS | g13843.t4 | NA | NA |
Sequences
>g13843.t4 Gene=g13843 Length=799
ATGAGATTTAATGTGAAGGAAGTTAGAGAGTTAGCTACGCAACATAAATGTGAAAAAGAA
GGCAATCTGTTCTTTCGTGAGCGTCAGGAAGGCTTTTTTCGTAAAGCAGAAGGTGAAGCA
AATACTGATAAAACTGGATTAAGTTGCATTAATCTTAAGATTAATAACAATAATAAGTCA
CATAATCCAAAAATAACCCGAAGAAGATCATTCAGTTGTATTGGAGTTGGATTTTCAAAA
GTCAGTAGTCAAAGATGGTGTAAATTGCGTGGAAATTTGCTATTTTATTTTAAAACGAAC
GATCAATTCTCAGAGCCAGCAGGAGTGATTGTACTTGAAAAATATCGTGTAACGATTCCC
AATGAGGCTTCTTTTTCTAATAGTGAAAATTTTGAAGGCTTTCCATTCTTTATAGAATTT
GAAGACGGCTTAAATCAAAGACTTGGTGCAACGACAGAGCAAGAAAGGAATGAGTGGGTA
CAAGCACTAAAAATGGCAGGATATGATTTGATGAGAGCCCAACTTCAATATTTACGTGAG
CAGATTGAAAAGAGACGTGCAAGTCACAAAATGGATGTAGATGTTGACATGCATCGTTTA
CAGACTGGCAATAATATAGGTGAAGATGATGACGATTTGATTCGTTTTTAAATGAAATCT
TTATGTGTTTTTGCATGCCAAAGATTATTGTTATGCAGTATTTCTAGATGGAAAAAATAA
AAATCCACAAATTATGTGATTGTTGTTAACGATAAAAATTTTCTTTCTATTTCAATTTTT
ATTTTATTTAATTTAATTT
>g13843.t4 Gene=g13843 Length=216
MRFNVKEVRELATQHKCEKEGNLFFRERQEGFFRKAEGEANTDKTGLSCINLKINNNNKS
HNPKITRRRSFSCIGVGFSKVSSQRWCKLRGNLLFYFKTNDQFSEPAGVIVLEKYRVTIP
NEASFSNSENFEGFPFFIEFEDGLNQRLGATTEQERNEWVQALKMAGYDLMRAQLQYLRE
QIEKRRASHKMDVDVDMHRLQTGNNIGEDDDDLIRF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g13843.t4 | Gene3D | G3DSA:2.30.29.30 | - | 67 | 167 | 0.0000000 |
| 2 | g13843.t4 | PANTHER | PTHR12187:SF11 | AGAP000124-PA | 1 | 208 | 0.0000000 |
| 3 | g13843.t4 | PANTHER | PTHR12187 | AGAP000124-PA | 1 | 208 | 0.0000000 |
| 1 | g13843.t4 | Pfam | PF00169 | PH domain | 83 | 166 | 0.0000001 |
| 7 | g13843.t4 | ProSiteProfiles | PS50003 | PH domain profile. | 84 | 168 | 9.0110000 |
| 5 | g13843.t4 | SMART | SM00233 | PH_update | 17 | 170 | 0.0000001 |
| 4 | g13843.t4 | SUPERFAMILY | SSF50729 | PH domain-like | 77 | 179 | 0.0000000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016316 | phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
