General information for g13843.t9
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Type II inositol 3,4-bisphosphate 4-phosphatase.
Parent gene
- The parent gene g13843 is located on chr_1: 32760780..32761899 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13843 | g13843.t9 | isoform | g13843.t9 | 32760780 | 32761804 |
| chr_1 | g13843 | g13843.t9 | exon | g13843.t9.exon1 | 32760780 | 32761125 |
| chr_1 | g13843 | g13843.t9 | exon | g13843.t9.exon2 | 32761368 | 32761804 |
| chr_1 | g13843 | g13843.t9 | cds | g13843.t9.CDS1 | 32761442 | 32761804 |
| chr_1 | g13843 | g13843.t9 | TSS | g13843.t9 | NA | NA |
| chr_1 | g13843 | g13843.t9 | TTS | g13843.t9 | NA | NA |
Sequences
>g13843.t9 Gene=g13843 Length=783
GGTATGACTTGTGCTTTTTCTTCATTTTTACATATAACAATCATTTATGATGATTTTCAA
AAATGCCAATATTTCTTACGAATTTATTTCTTTTCTTTCTTCATAGTTTTATGGAAGTGA
ATGGGATTTTTGGTCCGATATGAATATTGCAATCGAAGATTTATCGACAGTCAATTTCAC
ACTTGTACGACACAATACAAAAGCAATGCCTATGCCAAAAGTTAGTGGTTCGCGTCAATC
TATTGTGGTTTATTTGCCAGTACCAGATTACGTTTACGCTTTACTGCCACCATCGAATGG
TCAATCGCCATTGAATCGTGATCAAATTACTTTTAAAGTGACACCTCTGGGAAAAATTAT
TTCATTCAAACACAATCGACAGTAAAAGATAATGTTGTGTCGGAACAGATTGTGACAAAT
ATGTTGGATAAAATGGAAGAATTATTGAGAGTGAATAGCTCTAAGAATGTAAAAGTACTC
CATGTAGCAGAAGATATTACAAGAGCACTCAATGGATTAAGAGTCACTTCATGTAAGAGT
GCTAAAGATCGTACTGGCATGGCAGTGACATTGGAGCAAGCGAGAATTTTGCAACAAGAA
TTTCATCTGCCAGCAGGAAATCTTCAAAATGTTCTTGATGTAATGCGATCAGAGGGTACT
CGTCTTGATAATACTTTCAAGAACATTTGCAGACGCAAGTATGCATTTAATTTGCCTCAA
GTTCTCGCACTTCCACCACTTTATCGTCCTCCGACAGCTTCATTTGGAAAAGCACAAACT
TAA
>g13843.t9 Gene=g13843 Length=120
MLDKMEELLRVNSSKNVKVLHVAEDITRALNGLRVTSCKSAKDRTGMAVTLEQARILQQE
FHLPAGNLQNVLDVMRSEGTRLDNTFKNICRRKYAFNLPQVLALPPLYRPPTASFGKAQT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g13843.t9 | PANTHER | PTHR12187:SF11 | AGAP000124-PA | 2 | 120 | 0 |
| g13843.t9 | PANTHER | PTHR12187 | AGAP000124-PA | 2 | 120 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016316 | phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
