Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Acyl-CoA-binding domain-containing protein 6.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13846 g13846.t1 isoform g13846.t1 32765521 32766246
chr_1 g13846 g13846.t1 exon g13846.t1.exon1 32765521 32766246
chr_1 g13846 g13846.t1 cds g13846.t1.CDS1 32765521 32766246
chr_1 g13846 g13846.t1 TSS g13846.t1 32766701 32766701
chr_1 g13846 g13846.t1 TTS g13846.t1 NA NA

Sequences

>g13846.t1 Gene=g13846 Length=726
ATGTCCGAAAAAGAAGAAGATAAGTTTAATTTAGCTGCTAACTACATCCAGTCAAATCAT
CATAAATTCAACAAAGATCAATTATTAAAATTTTACAGTTTTTATAAGCAAGCAACAATT
GGAAAATTAGATCCTGAACAAAATCCAAAACCTTCATTTTTCAAACTTAATGATCGAGCA
AAATGGGAAGCATGGAATTCACTAAAAGAAATGACCCAAGAGGAGGCAATGAAAGAATAT
GTAAAGCTTTTAACTGATATAATGCCTGAATGGATTGATATATCTGAACAGAACAGTGAC
AAAAGCAAACATTCATTTGGTGTAAGTGTCTCTCGAATGAAAAATGAAGATGAGTTAATA
GATGATGCAGATAAGACAATAGAAGATTTCATAAAAGAGGGAAATGTTGAAAAGTTCAAA
GAGCTACTTTCATCGATTGAAGACTTAAATGAGATAGATGAAGACTCCGGTCTTGCTCTT
ATACATTGGATAAGTGATAGAGGAATGGATCAAATCCTTGAAACATTTTTATCTCAAAAA
GGAATCGATGTTGATTTACAAGATAATGAAGGTAGCACAGCTTTACATTATGCTTCCTCT
TGTGGTCATACAAATTGTATAAAATTACTTTTAAACTATGGAGCAAAGAAAGATATTTTA
GATTCTGAAGAGAATTCATGTATTGATGTCGCATATGATGATGAAATAAAGAAAATGCTT
TGTTGA

>g13846.t1 Gene=g13846 Length=241
MSEKEEDKFNLAANYIQSNHHKFNKDQLLKFYSFYKQATIGKLDPEQNPKPSFFKLNDRA
KWEAWNSLKEMTQEEAMKEYVKLLTDIMPEWIDISEQNSDKSKHSFGVSVSRMKNEDELI
DDADKTIEDFIKEGNVEKFKELLSSIEDLNEIDEDSGLALIHWISDRGMDQILETFLSQK
GIDVDLQDNEGSTALHYASSCGHTNCIKLLLNYGAKKDILDSEENSCIDVAYDDEIKKML
C

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g13846.t1 Coils Coil Coil 113 133 -
10 g13846.t1 Gene3D G3DSA:1.20.80.10 - 1 108 2.7E-31
9 g13846.t1 Gene3D G3DSA:1.25.40.20 - 120 241 2.1E-23
3 g13846.t1 PANTHER PTHR24119:SF0 ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 6 2 240 2.0E-44
4 g13846.t1 PANTHER PTHR24119 ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 6 2 240 2.0E-44
6 g13846.t1 PRINTS PR00689 Acyl-coA-binding protein signature 23 41 1.2E-6
5 g13846.t1 PRINTS PR00689 Acyl-coA-binding protein signature 70 87 1.2E-6
2 g13846.t1 Pfam PF00887 Acyl CoA binding protein 6 89 1.3E-24
1 g13846.t1 Pfam PF12796 Ankyrin repeats (3 copies) 133 219 8.1E-12
15 g13846.t1 ProSiteProfiles PS51228 Acyl-CoA-binding (ACB) domain profile. 5 93 37.373
14 g13846.t1 ProSiteProfiles PS50297 Ankyrin repeat region circular profile. 122 222 20.659
16 g13846.t1 ProSiteProfiles PS50088 Ankyrin repeat profile. 190 222 13.117
12 g13846.t1 SMART SM00248 ANK_2a 156 186 1600.0
13 g13846.t1 SMART SM00248 ANK_2a 190 219 2.4E-6
8 g13846.t1 SUPERFAMILY SSF47027 Acyl-CoA binding protein 6 92 1.15E-26
7 g13846.t1 SUPERFAMILY SSF48403 Ankyrin repeat 129 233 2.31E-20

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF
GO:0000062 fatty-acyl-CoA binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values