General information for g1385.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Adenylate kinase isoenzyme 6-like protein.
Parent gene
- The parent gene g1385 is located on chr_3: 10436930..10437572 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1385 | g1385.t6 | TSS | g1385.t6 | 10436828 | 10436828 |
| chr_3 | g1385 | g1385.t6 | isoform | g1385.t6 | 10436930 | 10437572 |
| chr_3 | g1385 | g1385.t6 | exon | g1385.t6.exon1 | 10436930 | 10436966 |
| chr_3 | g1385 | g1385.t6 | exon | g1385.t6.exon2 | 10437032 | 10437166 |
| chr_3 | g1385 | g1385.t6 | cds | g1385.t6.CDS1 | 10437116 | 10437166 |
| chr_3 | g1385 | g1385.t6 | exon | g1385.t6.exon3 | 10437246 | 10437572 |
| chr_3 | g1385 | g1385.t6 | cds | g1385.t6.CDS2 | 10437246 | 10437572 |
| chr_3 | g1385 | g1385.t6 | TTS | g1385.t6 | 10437590 | 10437590 |
Sequences
>g1385.t6 Gene=g1385 Length=499
ATGGCAAAACCTAATATACTTGTTACGGGGACTCCAGGTGCAGGCAAGTCTCATTTTGCA
AAACAAATTGCCGAAGAAAATGGAATGAGATTTCTTGAAATAAGCAAAATTGTACAGGAC
AATGGCTTTACAGACGGTTTCGATGAAACACTCAATTGTCCAATATTGGATGTTGCTTGA
CTATCTTGAACCACTTATGAACGAGGGAAATAATGTAGCAGAATATCATTCCTCTGAGTT
CTTTCCTGAACGTTGGTTTCAAGCTGTTTATGTGGTGAGATGCAATACTGATGTTTTATT
CAAGAGACTCGAAGAGAGAGGATACAATGCAAAAAAGATTCAGAACAATGTTGAATATGA
AATATTTCAAATGGCACTGGATGAAGCAAAGAGCAGCTATAAGCCGGAAATAGTATTTGA
AGTACGTGGTGAAAATGAAAAAGACCTCGAAGATAATTTAAAGAAGGTTGGTGAATTTAT
AAACAATTATGAAGAATGA
>g1385.t6 Gene=g1385 Length=125
MALQTVSMKHSIVQYWMLLDYLEPLMNEGNNVAEYHSSEFFPERWFQAVYVVRCNTDVLF
KRLEERGYNAKKIQNNVEYEIFQMALDEAKSSYKPEIVFEVRGENEKDLEDNLKKVGEFI
NNYEE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g1385.t6 | Gene3D | G3DSA:3.40.50.300 | - | 5 | 125 | 0.0e+00 |
| 2 | g1385.t6 | PANTHER | PTHR12595:SF0 | ADENYLATE KINASE ISOENZYME 6 | 10 | 124 | 0.0e+00 |
| 3 | g1385.t6 | PANTHER | PTHR12595 | POS9-ACTIVATING FACTOR FAP7-RELATED | 10 | 124 | 0.0e+00 |
| 1 | g1385.t6 | Pfam | PF13238 | AAA domain | 26 | 82 | 0.0e+00 |
| 4 | g1385.t6 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 12 | 116 | 1.3e-06 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0004017 | adenylate kinase activity | MF |
| GO:0016887 | ATP hydrolysis activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed