General information for g13861.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative vitellogenin receptor.
Parent gene
- The parent gene g13861 is located on chr_1: 32888616..32895295 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13861 | g13861.t1 | TSS | g13861.t1 | 32885627 | 32885627 |
| chr_1 | g13861 | g13861.t1 | isoform | g13861.t1 | 32885783 | 32895295 |
| chr_1 | g13861 | g13861.t1 | exon | g13861.t1.exon1 | 32885783 | 32885850 |
| chr_1 | g13861 | g13861.t1 | cds | g13861.t1.CDS1 | 32885783 | 32885850 |
| chr_1 | g13861 | g13861.t1 | exon | g13861.t1.exon2 | 32885914 | 32886032 |
| chr_1 | g13861 | g13861.t1 | cds | g13861.t1.CDS2 | 32885914 | 32886032 |
| chr_1 | g13861 | g13861.t1 | exon | g13861.t1.exon3 | 32887027 | 32887264 |
| chr_1 | g13861 | g13861.t1 | cds | g13861.t1.CDS3 | 32887027 | 32887264 |
| chr_1 | g13861 | g13861.t1 | exon | g13861.t1.exon4 | 32887936 | 32888035 |
| chr_1 | g13861 | g13861.t1 | cds | g13861.t1.CDS4 | 32887936 | 32888035 |
| chr_1 | g13861 | g13861.t1 | exon | g13861.t1.exon5 | 32888147 | 32888401 |
| chr_1 | g13861 | g13861.t1 | cds | g13861.t1.CDS5 | 32888147 | 32888401 |
| chr_1 | g13861 | g13861.t1 | exon | g13861.t1.exon6 | 32888470 | 32889039 |
| chr_1 | g13861 | g13861.t1 | cds | g13861.t1.CDS6 | 32888470 | 32889039 |
| chr_1 | g13861 | g13861.t1 | exon | g13861.t1.exon7 | 32889100 | 32889180 |
| chr_1 | g13861 | g13861.t1 | cds | g13861.t1.CDS7 | 32889100 | 32889180 |
| chr_1 | g13861 | g13861.t1 | exon | g13861.t1.exon8 | 32889378 | 32889444 |
| chr_1 | g13861 | g13861.t1 | cds | g13861.t1.CDS8 | 32889378 | 32889444 |
| chr_1 | g13861 | g13861.t1 | exon | g13861.t1.exon9 | 32889619 | 32889831 |
| chr_1 | g13861 | g13861.t1 | cds | g13861.t1.CDS9 | 32889619 | 32889831 |
| chr_1 | g13861 | g13861.t1 | exon | g13861.t1.exon10 | 32889894 | 32891450 |
| chr_1 | g13861 | g13861.t1 | cds | g13861.t1.CDS10 | 32889894 | 32891450 |
| chr_1 | g13861 | g13861.t1 | exon | g13861.t1.exon11 | 32891508 | 32894806 |
| chr_1 | g13861 | g13861.t1 | cds | g13861.t1.CDS11 | 32891508 | 32894806 |
| chr_1 | g13861 | g13861.t1 | exon | g13861.t1.exon12 | 32894867 | 32895295 |
| chr_1 | g13861 | g13861.t1 | cds | g13861.t1.CDS12 | 32894867 | 32895295 |
| chr_1 | g13861 | g13861.t1 | TTS | g13861.t1 | 32895373 | 32895373 |
Sequences
>g13861.t1 Gene=g13861 Length=6996
ATGACTGAAAGTGTCAAAGAATTGCTTCCAAAAAAGGAAACTATCGAACTTCGTAACAAA
CTTATTGGAAAATCATGTTCGTTATTCTATAAATCAGATCCTTTGAAAATCGTTCGAGGA
CAAGGACAATACATGTTTGATGAAGAAGGTCATAAATATTTAGATTGCATCAATAATGTA
GCAACGGTCGGGCATTGCCACCCAAAAGTCGTCGAAGCTGGCTCCAAACAGATGTCAATC
ATTTCAACAAATTCTCGATTTTTACATGATGAAATGATTTTATGCGCACAAAATCTAATA
AACCGTATGCCAGGCAATACTTTATCAGTATGCTATTTTGTTAATAGCGGTTCAGAAGCC
AATGATTTAGCTTTGCGATTAGCAAGAGCACATACGAAGCAACGCGATGTTATTACATTA
GACCATGCATATCATGGTCATCTTCTTGCCTGTATGGAAATTTCTCCATACAAGTTCAAT
CAATCAGATAATATTGATGTAAAGAAGCCAAATTATGTTCACATTGCATCATGTCCAGAT
ACTTATCGGGGAAAATATCGTGATAGTGACTATCCAGAATGTGAGTTGGGTGAAATGTAT
GCAAATGATGTGAAAGAAATTATTGAAAATGTCGAAAAAGAAGGTCGAGGTATTGCAGCA
TTCATTGCAGAGTCGTTACAAAGTTGTGGAGGGCAAATTATTTACCCAAAAGATTACTTC
AGAAAAGTTTTTAAAGCAGTACGTGCAAATGGAGGAGTTTGTATTGCTGATGAAGTTCAA
GTTGGGTTTGGGCGTGTCGGAATAAAGTATTGGGCATTTGAAACACAAGAAGTTGTTCCC
GACATTGTAACCGTTGCTAAACCAATGGGAAATGGGCATCCTGTCGGAGCTGTTATTTGC
ACAAAAGAAATTGCTGATAGTTTTACAAATACTAATGTGCAATATTTCAATACTTTTGGA
GGCAATCCAGTGTCATGTGCTATCGCTAATGCAGTGATGCAAGTCATAGAAGAGGAAAAA
CTTCAAGAAAATTGCTTAATTGTTGGTGATTATCTAATGCAACGATCAACAGAATTGATG
CGTAACTTTTCAATTATCGGAGATGTGAGAGGAATGGGCTTGTTTATTGGAATTGAGTTA
GTCAAAGATCGAAAGTTAAGAACACCTGCAACAGAAGAGGCAGCATTTGTAGTCAATCGA
ATGAAGAATATCCACAAAATTTTAGTGAGCTCAGATGGTCCAGATGAGAATGTTGTTAAA
TTGAAACCACCAATGGTTTTCAATAAACAAAATGCGGATGAATTTATTGCAGGATTTATC
GAATGTCTTCAACAGCTTGAAGAAAGAGATAAAATGAGAAAATTAACTACAACTCAATTG
CCATGTGCATTGACTGCATCTACAACCATCATGGAAAAGCGTGAACATACTTTGATTGTT
CTATGTAAAATTATTTTTGTTTCTTGTTATACAAGTCGTAATAGATTAAATATAATAGAC
ATGACCAAAAGATTGAAAGTGTTAAGTTTAAAAACTTTATTCATTGCTACAAGTTTAATT
CTGATTTCAAAAAAATCAATTTATACTTTTGCTGATCAATGTGATTTAAGCACGAAATTT
TTGTGCGATGATGGTAAAACATGCATTCCAAAGTCGTATTTATGTAATTTAGAAGTGGAT
TGTCCGGATAAAGAAGATGAAATTGATTGTGATATTCCAAAATGTGAATCAAATAATAAT
AAATTCAGGTGCCGGGATGGTGCTTGTATTAGTGCTGATTTAATTTGTGATGAAGCTCCC
GATTGTAAAGATTTTAGTGATGAAAGTGATGAACTGTGCGATAAAATTAAGGAAAGAAGA
AATGAATCAAATTCAATAGTTTACAGCACTGCAAAAGTAGAATGTAATGCAACTACTCAT
TTTCAATGTAGCGATTATGCTTGCATTCCAAATGAAGAAGTATGCAATGGTGCTCGAAAT
TGTGTTAATGGAGAAGACGAAAATCCAAAAATGTGTAAAGAAAAAAAGGATAAATTTAAA
TGCCCAGGTTTCGAATGTAAAAATGGAAAATGTCTAGAAAGAGTTGAATTTATCTGCGAT
GGACTTGATGATTGCGGTGATGGAAGTGACGAGTTTCATTGTGCACGAGATTGCCAATTA
AGCGATAAAAAATTTCTTTGTAAATCTGGTGATGAGTGTTTGAATTTATCTAAAGTATGT
GACGGTAAAGAAGATTGTCATGATAAATCTGATGAGGGAGGTCAGTGTTTCAAAAAAGAT
GCATGTGAGAAAGTAGATTGTAAAAATGATTGCGTAATTCTTCCATCTGGACCAACATGC
TTATGCAAAACTGGTTTTCAATTCAATCATACCACCGAAAAATGCGAAGATATAAACGAA
TGTGATATTTTTGGTACATGTTCACAAGCTTGCGTGAATACAAACGGTTCTCATTATTGC
ACATGTGAAAAGAATTTTTTGCTTAATCAAGATGGAAAATCATGTGACACTACAAGTTCA
GAAGTTTCTTTGATATACAGTACAAAAAATGCGATCAAAAGAATTGCATTAGGGCAGCGC
AATAGAGGTTTTCATGACTTAATTTATAGAGCAAAACAACCCGTTGGTGTTGGTTATGAC
GGTGAAAATTTTTATTGGGCAGAAGTGCAAAATGAAAAGGAAATAATTGCTAAAATTAGT
ACTGAAAAAGGTTCAAAGAAAGAGATTTTATTAACAAATGGATTAGTAATGCCCGAATAT
TTAGTTGTCGATTGGCTCACAAAGAATATTTATTTTACTGATTCTGCTAGGAATCACATT
GCAGTGTGTGTGAATAGTGGATACCATTGTACAGAACTTGTGAAAAATGAACTCATAAAA
AGTCCTAGAGGAATTGCAATTCATCCAATAGAATCTCTTTTATTTTGGTCAGATTGGGGT
GATCATTCTCACATAGGCATATCATATATGGATGGTTCACAATCAAGAATATTAGTTGAT
AATGTGGCATGGCCAAATGGTCTTACTGTTGATTGGCCTAACGGAAGAATCTATTGGGTT
GACGCAAGGCAATTCAAAATTGAAAGTGCAACACTTACTGGTGAAGATAGACGAGTTATT
TTAAATGGTGTCTTTCTACATCCGTTTTCATTAACTCTTCATGGAAATTATTTATATTGG
TGTGATTTTGAATCTCGATCAATTGAATATTGTGACAAATTTACTGGCAAACAGCATGAT
GTTCTTCTACAAGGAGAAGACATTTTAGATATTAAAATTTTTGACAAAGCATCGATGCCA
CAAATAAAACATGCTTGCATGGATAACAGTTGTTCACATATTTGTTTATTAAGCTCGAAT
AACTCATACACTTGTGCTTGTCCTATGGATATGGAATTAATGAGTGATGAACATTCGTGT
ACTTATAGTAAGGATTCATACAAAATCATTTATGGCATTGGAAATTACTTAACTCAAAGA
CCTTATAAAGCTTTTGGTCGTAGTATTGAAACTGAACCAAAAATTGTAGAAGATTGGTTC
GACCGAATGGAATTCAATTCTCTAAATGGTGATATTTTTTATGCTGATAATTATAAAGGC
AAAATTATGGTTCTTGATACATACGGTGATAGTCATGTGCTTGTAGAAGATAAGCATCTC
AGTGTTTCATCAATGTCTTTTGATTATCTTGCCAACAATTTATATTGGTCTAATGAAAAG
GAAGGAACGATTGAAGTGTTATCATTAAATACCAAAAAACGAACAATTCTTTATCATTAT
AAAGGAAATTATAAACCAAATGCAATTGCTGTAATACCATCAATAGGTGAAATGTTTGTT
GCACTTGTATCAGATGATCATTCTCATATCGATAGACATTCGATAAAAGGAGAAATGTTC
GATGATAGACATGTGTATTTAATTGAAACGGGTTTAAGTAATACAGGACCATTCCATTTT
GCTATTGACGAAATAGAGAAAAAAATTTATTGGTCCGATACTGGTTATAGAAAAATTGAA
TTTGCTAATTTTAATGGTTCAGATAGAATGCAATTTGTAATACCCGAAAAATCTCCTAGT
TCTATTGCTTTGATTGATGATTGCCTACATTGGATTTCAAGAAAATCAGATTCTATAAGA
TGGAAAAATAAAACTGGAAAAGGTCAAGTGAAGGCAATGGAAATAAATATGCCAAAATCA
CTCAGTAAAAAAGATTACCCAGATATTGTTAACATTATCTCAGGAGCTCCTTTGAAAATA
AGTAAACATCCTTGTATGACAGATAATGGTGGATGTTCAGATATTTGTATTTCGGATGGA
CCAACGCAAAGAGTTTGTGAATGTGCTACTGGTTATGAATTCATTGATAAACAAAATATG
ACTTGTGTTAAAAGATCAATCTGTGATTTTCGATGTAAATCTGGAGAATGTATTGAATCG
AAGAAGAAGTGTGATGGAAAAGCGGATTGCAAAGATAAATCAGATGAAGAGAAACAACTT
TGTGGAAATCCTAACACTTGTTTTATTGATGAATTCAGATGCGATAATGGTGAATGCATT
TCGATGCAATATAGATGTGATCACAATTACAATTGCAAGGATAAATCAGATGAAAAAAAT
TGTCCAAAAGAAGGTGAATTATTTAAATGCAAGACTGATCAAATTCAATGTCCAAATACT
GATGTTTGCATATATACAACTCAACTTTGTGATCAAACAAAAGATTGCGAAGATGGTTTC
GATGAATCTGCGGAGAATTGTAATCGAAAATGTCACAAAACTGAATTCAAGTGTGATTCT
GGGCAATGCATACCAAAAGAATTTGAATGTAACGGTCAAATTGATTGTGTTGACGGAACA
GACGAGCATACCGGCTGTATACCGGTTTGCAAGTCACCGAAAAAAGCATGTCGAGATGGA
CACTGTATACCCGCCAAACTTTTCTGTGATGGTAATGAAGATTGCAGAGATGGTTATGAT
GAAGCTAATTGTGAAAATGCAAGCAAATCTTGTAATATTGATGAATTTCAATGTAGACCT
ATTAATCCAAATCAAGAACCGATATGTGTGCCTAAATCACAAAAATGCGATAGAGTAGTT
GACTGTCCACTTGGTGAAGATGAAAGAGGTTGTGATTGTCCTAGGCACATGTTTGAATGC
GATAATGGTCAATGTATAATAGATATGTTCAGATGTGATGGTGTTTCTCAATGCAGAGAC
AATTCAGATGAAAAAGATTGCAAGCCAAAAAACTCCGATGTTCACATGAAAGCTGTAACT
TGCTCTAAAAATACGTTCAGATGTTCAGATGGAACTTGCTTGAATTATGAAAACGTTTGT
GATGGAAAAAAAGATTGTGAAGACGATGAAGGCTCGACTTGTAATTTAGCATGTACTGCA
AATAGTTGCGATGAAATATGTCACAAAACTCCAAAAGGATCAGTGTGTGCTTGTCAAGAA
GGTTTTGAATTGAAAGCAAAGGGCGAACGAAAGTGTGTTGATATTAATGAATGTCTTTCA
TTTCCATGTTCACAAATATGTAAAAATATTCAAGGATCATTTGAGTGCTCTTGTTATGAA
GGATATATTTTAACAAATAATGGAATCGATTGCAAAGCAAAAGGAAAAGCACAAAAACTA
TTTTATATTCTTTTTGATCAAGTCAGAATGATTACAGTTTCGTCACAAATCGATGAGGAT
ATTATTTTTGATGGCAAATTACCATTAACTGATATAGCTGTAGATTTTAAATTAAATATG
GCTATCATTTCCTCAGAAGATGCAAATGAAATGATTGCCGTACATATTAATGATGGCTCA
ATTGTGAAAAATTACACAAAGTTTCCTCCTGCTCGCCTTCTCAGCTATGATTGGATTACA
AAAAATCTTTACATCGTTAACAAACCTAGTCTTGATCGTTGTGAAATTCATATTTGCAAT
ATAATGACTGAAAATTGTATATTATTGAAGCGTTTCCAGAAACATAATGAATATATTTCA
TCAATAGATATTGATCCTATTAACAACTATATTTTCTTTATAAAAAACACCATTTCATTT
TATGCAAAAATCAACAGTGAAATCATAAGAATGAAGCTTGATGGAAGTGATGAAAAGCGA
ATTTTCATGGAAGAAACACAAGCATTATTGAGAGCACTAACTATTGATATTGATAGAGAA
ACAATTTTCTTCACAGAAGTAAGTTCACAATCACTTCAAGCAATCGATTATGATGGTCAT
AAAATCAACACTATTGCACATCAATCAAAAAACCTTCGTTATCCTATAGCTATATCAGTT
TTTGAAAATCATGCCTATGTTTTGGATGAGAAAAGCTCAAAAGTAACAAAATGCAAAGTT
TATGGTGATAATAGCTGTGATGCAATGAATTTTAATGCTGGAGCTTCAAGACGTATTTTA
ATTTCACATGAAGTTAAACAAAAGGAACGAAATAATTTCTGTGAAAATAATAAATGCAGT
GAAATATGTATCAATGCAGACTTGGGAGCAAAATGTTTGTGTTCAAAAGAAAAAGGACTC
ATTCCAGCTATTTATTGTTCTGAAATGATAAAAGATAATTCAATTTCTCCGACTCCCGAA
AAATCTTCATATATATGGTTGTATTTGATGTTTTTAATAATAATCATTACGGGTGGTCTG
GCATATTATGTTTACAAGAAAAGAGGTTTTCATCATAATTGGAATATCAACATACATTTT
GATGGTAACAAGGGGCCTGTTGTCACAGAATTTACTCCAAATTTAAAAGAAGCACAATTA
ACAAAAGTCACAGGAGCATCAACAACTTCATCAGGAATACCATATTTAACAGTGGATGGA
GTAGAATACAATGAATTGATAAATAATAATGCTACACCGTCTGATTATTTATCAGTCAAT
TCGAAAGTAGTTAATGAGACTGAATTTGAAGTGCCACCTGAAGAAGAAGAAGAAATTTTT
GATAATGAGTGTGATAAATCAAGACTTATTCATTAG
>g13861.t1 Gene=g13861 Length=2331
MTESVKELLPKKETIELRNKLIGKSCSLFYKSDPLKIVRGQGQYMFDEEGHKYLDCINNV
ATVGHCHPKVVEAGSKQMSIISTNSRFLHDEMILCAQNLINRMPGNTLSVCYFVNSGSEA
NDLALRLARAHTKQRDVITLDHAYHGHLLACMEISPYKFNQSDNIDVKKPNYVHIASCPD
TYRGKYRDSDYPECELGEMYANDVKEIIENVEKEGRGIAAFIAESLQSCGGQIIYPKDYF
RKVFKAVRANGGVCIADEVQVGFGRVGIKYWAFETQEVVPDIVTVAKPMGNGHPVGAVIC
TKEIADSFTNTNVQYFNTFGGNPVSCAIANAVMQVIEEEKLQENCLIVGDYLMQRSTELM
RNFSIIGDVRGMGLFIGIELVKDRKLRTPATEEAAFVVNRMKNIHKILVSSDGPDENVVK
LKPPMVFNKQNADEFIAGFIECLQQLEERDKMRKLTTTQLPCALTASTTIMEKREHTLIV
LCKIIFVSCYTSRNRLNIIDMTKRLKVLSLKTLFIATSLILISKKSIYTFADQCDLSTKF
LCDDGKTCIPKSYLCNLEVDCPDKEDEIDCDIPKCESNNNKFRCRDGACISADLICDEAP
DCKDFSDESDELCDKIKERRNESNSIVYSTAKVECNATTHFQCSDYACIPNEEVCNGARN
CVNGEDENPKMCKEKKDKFKCPGFECKNGKCLERVEFICDGLDDCGDGSDEFHCARDCQL
SDKKFLCKSGDECLNLSKVCDGKEDCHDKSDEGGQCFKKDACEKVDCKNDCVILPSGPTC
LCKTGFQFNHTTEKCEDINECDIFGTCSQACVNTNGSHYCTCEKNFLLNQDGKSCDTTSS
EVSLIYSTKNAIKRIALGQRNRGFHDLIYRAKQPVGVGYDGENFYWAEVQNEKEIIAKIS
TEKGSKKEILLTNGLVMPEYLVVDWLTKNIYFTDSARNHIAVCVNSGYHCTELVKNELIK
SPRGIAIHPIESLLFWSDWGDHSHIGISYMDGSQSRILVDNVAWPNGLTVDWPNGRIYWV
DARQFKIESATLTGEDRRVILNGVFLHPFSLTLHGNYLYWCDFESRSIEYCDKFTGKQHD
VLLQGEDILDIKIFDKASMPQIKHACMDNSCSHICLLSSNNSYTCACPMDMELMSDEHSC
TYSKDSYKIIYGIGNYLTQRPYKAFGRSIETEPKIVEDWFDRMEFNSLNGDIFYADNYKG
KIMVLDTYGDSHVLVEDKHLSVSSMSFDYLANNLYWSNEKEGTIEVLSLNTKKRTILYHY
KGNYKPNAIAVIPSIGEMFVALVSDDHSHIDRHSIKGEMFDDRHVYLIETGLSNTGPFHF
AIDEIEKKIYWSDTGYRKIEFANFNGSDRMQFVIPEKSPSSIALIDDCLHWISRKSDSIR
WKNKTGKGQVKAMEINMPKSLSKKDYPDIVNIISGAPLKISKHPCMTDNGGCSDICISDG
PTQRVCECATGYEFIDKQNMTCVKRSICDFRCKSGECIESKKKCDGKADCKDKSDEEKQL
CGNPNTCFIDEFRCDNGECISMQYRCDHNYNCKDKSDEKNCPKEGELFKCKTDQIQCPNT
DVCIYTTQLCDQTKDCEDGFDESAENCNRKCHKTEFKCDSGQCIPKEFECNGQIDCVDGT
DEHTGCIPVCKSPKKACRDGHCIPAKLFCDGNEDCRDGYDEANCENASKSCNIDEFQCRP
INPNQEPICVPKSQKCDRVVDCPLGEDERGCDCPRHMFECDNGQCIIDMFRCDGVSQCRD
NSDEKDCKPKNSDVHMKAVTCSKNTFRCSDGTCLNYENVCDGKKDCEDDEGSTCNLACTA
NSCDEICHKTPKGSVCACQEGFELKAKGERKCVDINECLSFPCSQICKNIQGSFECSCYE
GYILTNNGIDCKAKGKAQKLFYILFDQVRMITVSSQIDEDIIFDGKLPLTDIAVDFKLNM
AIISSEDANEMIAVHINDGSIVKNYTKFPPARLLSYDWITKNLYIVNKPSLDRCEIHICN
IMTENCILLKRFQKHNEYISSIDIDPINNYIFFIKNTISFYAKINSEIIRMKLDGSDEKR
IFMEETQALLRALTIDIDRETIFFTEVSSQSLQAIDYDGHKINTIAHQSKNLRYPIAISV
FENHAYVLDEKSSKVTKCKVYGDNSCDAMNFNAGASRRILISHEVKQKERNNFCENNKCS
EICINADLGAKCLCSKEKGLIPAIYCSEMIKDNSISPTPEKSSYIWLYLMFLIIIITGGL
AYYVYKKRGFHHNWNINIHFDGNKGPVVTEFTPNLKEAQLTKVTGASTTSSGIPYLTVDG
VEYNELINNNATPSDYLSVNSKVVNETEFEVPPEEEEEIFDNECDKSRLIH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 93 | g13861.t1 | CDD | cd00610 | OAT_like | 30 | 443 | 7.05146E-138 |
| 87 | g13861.t1 | CDD | cd00112 | LDLa | 537 | 570 | 5.91203E-6 |
| 91 | g13861.t1 | CDD | cd00112 | LDLa | 580 | 610 | 1.2589E-5 |
| 90 | g13861.t1 | CDD | cd00112 | LDLa | 639 | 668 | 0.00102945 |
| 81 | g13861.t1 | CDD | cd00112 | LDLa | 684 | 714 | 2.88317E-7 |
| 86 | g13861.t1 | CDD | cd00112 | LDLa | 721 | 752 | 2.33009E-4 |
| 95 | g13861.t1 | CDD | cd00054 | EGF_CA | 797 | 835 | 0.00653363 |
| 83 | g13861.t1 | CDD | cd00112 | LDLa | 1470 | 1497 | 2.88317E-7 |
| 85 | g13861.t1 | CDD | cd00112 | LDLa | 1507 | 1541 | 4.44608E-9 |
| 82 | g13861.t1 | CDD | cd00112 | LDLa | 1550 | 1587 | 0.002401 |
| 80 | g13861.t1 | CDD | cd00112 | LDLa | 1591 | 1622 | 2.49017E-8 |
| 89 | g13861.t1 | CDD | cd00112 | LDLa | 1630 | 1664 | 6.31393E-8 |
| 88 | g13861.t1 | CDD | cd00112 | LDLa | 1671 | 1711 | 1.41631E-5 |
| 84 | g13861.t1 | CDD | cd00112 | LDLa | 1713 | 1747 | 7.69151E-9 |
| 92 | g13861.t1 | CDD | cd00112 | LDLa | 1761 | 1790 | 2.03679E-5 |
| 94 | g13861.t1 | CDD | cd00054 | EGF_CA | 1834 | 1866 | 7.04876E-5 |
| 59 | g13861.t1 | Gene3D | G3DSA:3.90.1150.10 | Aspartate Aminotransferase | 34 | 437 | 6.8E-140 |
| 76 | g13861.t1 | Gene3D | G3DSA:3.40.640.10 | - | 67 | 340 | 6.8E-140 |
| 67 | g13861.t1 | Gene3D | G3DSA:4.10.400.10 | - | 531 | 570 | 1.8E-7 |
| 63 | g13861.t1 | Gene3D | G3DSA:4.10.400.10 | - | 573 | 616 | 1.4E-8 |
| 68 | g13861.t1 | Gene3D | G3DSA:4.10.400.10 | - | 635 | 673 | 4.7E-8 |
| 69 | g13861.t1 | Gene3D | G3DSA:4.10.400.10 | - | 679 | 718 | 9.3E-7 |
| 71 | g13861.t1 | Gene3D | G3DSA:4.10.400.10 | - | 719 | 752 | 3.3E-7 |
| 58 | g13861.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 755 | 832 | 2.0E-12 |
| 62 | g13861.t1 | Gene3D | G3DSA:2.120.10.30 | TolB | 840 | 1146 | 6.7E-83 |
| 61 | g13861.t1 | Gene3D | G3DSA:2.120.10.30 | TolB | 1173 | 1469 | 2.5E-50 |
| 74 | g13861.t1 | Gene3D | G3DSA:4.10.400.10 | - | 1470 | 1502 | 6.0E-9 |
| 72 | g13861.t1 | Gene3D | G3DSA:4.10.400.10 | - | 1503 | 1542 | 3.2E-11 |
| 64 | g13861.t1 | Gene3D | G3DSA:4.10.400.10 | - | 1547 | 1593 | 5.8E-9 |
| 66 | g13861.t1 | Gene3D | G3DSA:4.10.400.10 | - | 1594 | 1623 | 2.6E-10 |
| 65 | g13861.t1 | Gene3D | G3DSA:4.10.400.10 | - | 1628 | 1668 | 6.4E-10 |
| 73 | g13861.t1 | Gene3D | G3DSA:4.10.400.10 | - | 1669 | 1712 | 9.7E-8 |
| 75 | g13861.t1 | Gene3D | G3DSA:4.10.400.10 | - | 1713 | 1748 | 2.6E-9 |
| 70 | g13861.t1 | Gene3D | G3DSA:4.10.400.10 | - | 1756 | 1797 | 4.2E-8 |
| 57 | g13861.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 1798 | 1838 | 6.2E-6 |
| 56 | g13861.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 1839 | 1875 | 2.0E-10 |
| 60 | g13861.t1 | Gene3D | G3DSA:2.120.10.30 | TolB | 1881 | 2191 | 2.8E-36 |
| 23 | g13861.t1 | PANTHER | PTHR22722:SF9 | LOW DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2A-RELATED | 515 | 611 | 1.8E-210 |
| 29 | g13861.t1 | PANTHER | PTHR22722 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED | 515 | 611 | 1.8E-210 |
| 22 | g13861.t1 | PANTHER | PTHR22722:SF9 | LOW DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2A-RELATED | 616 | 1149 | 1.8E-210 |
| 28 | g13861.t1 | PANTHER | PTHR22722 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED | 616 | 1149 | 1.8E-210 |
| 19 | g13861.t1 | PANTHER | PTHR22722:SF9 | LOW DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2A-RELATED | 1123 | 1543 | 1.8E-210 |
| 25 | g13861.t1 | PANTHER | PTHR22722 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED | 1123 | 1543 | 1.8E-210 |
| 21 | g13861.t1 | PANTHER | PTHR22722:SF9 | LOW DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2A-RELATED | 1469 | 1584 | 1.8E-210 |
| 27 | g13861.t1 | PANTHER | PTHR22722 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED | 1469 | 1584 | 1.8E-210 |
| 20 | g13861.t1 | PANTHER | PTHR22722:SF9 | LOW DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2A-RELATED | 1511 | 1790 | 1.8E-210 |
| 26 | g13861.t1 | PANTHER | PTHR22722 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED | 1511 | 1790 | 1.8E-210 |
| 18 | g13861.t1 | PANTHER | PTHR22722:SF9 | LOW DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2A-RELATED | 1792 | 2174 | 1.8E-210 |
| 24 | g13861.t1 | PANTHER | PTHR22722 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED | 1792 | 2174 | 1.8E-210 |
| 35 | g13861.t1 | PRINTS | PR00261 | Low density lipoprotein (LDL) receptor signature | 1475 | 1496 | 5.9E-36 |
| 33 | g13861.t1 | PRINTS | PR00261 | Low density lipoprotein (LDL) receptor signature | 1517 | 1538 | 5.9E-36 |
| 32 | g13861.t1 | PRINTS | PR00261 | Low density lipoprotein (LDL) receptor signature | 1601 | 1622 | 5.9E-36 |
| 31 | g13861.t1 | PRINTS | PR00261 | Low density lipoprotein (LDL) receptor signature | 1640 | 1661 | 5.9E-36 |
| 30 | g13861.t1 | PRINTS | PR00261 | Low density lipoprotein (LDL) receptor signature | 1687 | 1708 | 5.9E-36 |
| 34 | g13861.t1 | PRINTS | PR00261 | Low density lipoprotein (LDL) receptor signature | 1723 | 1744 | 5.9E-36 |
| 15 | g13861.t1 | Pfam | PF00202 | Aminotransferase class-III | 35 | 443 | 2.0E-79 |
| 2 | g13861.t1 | Pfam | PF00057 | Low-density lipoprotein receptor domain class A | 533 | 570 | 3.9E-7 |
| 10 | g13861.t1 | Pfam | PF00057 | Low-density lipoprotein receptor domain class A | 574 | 611 | 3.5E-7 |
| 6 | g13861.t1 | Pfam | PF00057 | Low-density lipoprotein receptor domain class A | 634 | 672 | 1.5E-6 |
| 4 | g13861.t1 | Pfam | PF00057 | Low-density lipoprotein receptor domain class A | 683 | 714 | 2.3E-5 |
| 11 | g13861.t1 | Pfam | PF00057 | Low-density lipoprotein receptor domain class A | 718 | 756 | 4.4E-6 |
| 14 | g13861.t1 | Pfam | PF07645 | Calcium-binding EGF domain | 797 | 835 | 7.3E-5 |
| 17 | g13861.t1 | Pfam | PF00058 | Low-density lipoprotein receptor repeat class B | 973 | 1012 | 5.5E-7 |
| 16 | g13861.t1 | Pfam | PF00058 | Low-density lipoprotein receptor repeat class B | 1015 | 1054 | 2.8E-7 |
| 8 | g13861.t1 | Pfam | PF00057 | Low-density lipoprotein receptor domain class A | 1469 | 1497 | 4.9E-8 |
| 3 | g13861.t1 | Pfam | PF00057 | Low-density lipoprotein receptor domain class A | 1506 | 1541 | 1.1E-9 |
| 5 | g13861.t1 | Pfam | PF00057 | Low-density lipoprotein receptor domain class A | 1549 | 1587 | 2.4E-5 |
| 9 | g13861.t1 | Pfam | PF00057 | Low-density lipoprotein receptor domain class A | 1590 | 1626 | 1.4E-9 |
| 12 | g13861.t1 | Pfam | PF00057 | Low-density lipoprotein receptor domain class A | 1630 | 1664 | 5.3E-9 |
| 7 | g13861.t1 | Pfam | PF00057 | Low-density lipoprotein receptor domain class A | 1712 | 1747 | 2.5E-7 |
| 1 | g13861.t1 | Pfam | PF00057 | Low-density lipoprotein receptor domain class A | 1760 | 1790 | 1.7E-5 |
| 13 | g13861.t1 | Pfam | PF07645 | Calcium-binding EGF domain | 1834 | 1866 | 2.0E-5 |
| 78 | g13861.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 2204 | - |
| 79 | g13861.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 2205 | 2225 | - |
| 77 | g13861.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 2226 | 2331 | - |
| 138 | g13861.t1 | ProSitePatterns | PS00600 | Aminotransferases class-III pyridoxal-phosphate attachment site. | 254 | 292 | - |
| 136 | g13861.t1 | ProSitePatterns | PS01209 | LDL-receptor class A (LDLRA) domain signature. | 589 | 613 | - |
| 134 | g13861.t1 | ProSitePatterns | PS01209 | LDL-receptor class A (LDLRA) domain signature. | 648 | 672 | - |
| 131 | g13861.t1 | ProSitePatterns | PS01209 | LDL-receptor class A (LDLRA) domain signature. | 691 | 714 | - |
| 137 | g13861.t1 | ProSitePatterns | PS01209 | LDL-receptor class A (LDLRA) domain signature. | 733 | 756 | - |
| 130 | g13861.t1 | ProSitePatterns | PS01186 | EGF-like domain signature 2. | 780 | 795 | - |
| 133 | g13861.t1 | ProSitePatterns | PS01209 | LDL-receptor class A (LDLRA) domain signature. | 1603 | 1626 | - |
| 135 | g13861.t1 | ProSitePatterns | PS01209 | LDL-receptor class A (LDLRA) domain signature. | 1689 | 1713 | - |
| 132 | g13861.t1 | ProSitePatterns | PS01209 | LDL-receptor class A (LDLRA) domain signature. | 1725 | 1747 | - |
| 139 | g13861.t1 | ProSitePatterns | PS01187 | Calcium-binding EGF-like domain signature. | 1834 | 1856 | - |
| 140 | g13861.t1 | ProSitePatterns | PS00010 | Aspartic acid and asparagine hydroxylation site. | 1847 | 1858 | - |
| 160 | g13861.t1 | ProSiteProfiles | PS50068 | LDL-receptor class A (LDLRA) domain profile. | 533 | 571 | 11.613 |
| 155 | g13861.t1 | ProSiteProfiles | PS50068 | LDL-receptor class A (LDLRA) domain profile. | 574 | 614 | 11.812 |
| 161 | g13861.t1 | ProSiteProfiles | PS50068 | LDL-receptor class A (LDLRA) domain profile. | 634 | 673 | 11.463 |
| 157 | g13861.t1 | ProSiteProfiles | PS50068 | LDL-receptor class A (LDLRA) domain profile. | 680 | 715 | 12.688 |
| 152 | g13861.t1 | ProSiteProfiles | PS50068 | LDL-receptor class A (LDLRA) domain profile. | 717 | 757 | 11.4 |
| 149 | g13861.t1 | ProSiteProfiles | PS51120 | LDL-receptor class B (LDLRB) repeat profile. | 882 | 927 | 9.622 |
| 142 | g13861.t1 | ProSiteProfiles | PS51120 | LDL-receptor class B (LDLRB) repeat profile. | 928 | 971 | 9.622 |
| 148 | g13861.t1 | ProSiteProfiles | PS51120 | LDL-receptor class B (LDLRB) repeat profile. | 972 | 1014 | 12.593 |
| 147 | g13861.t1 | ProSiteProfiles | PS51120 | LDL-receptor class B (LDLRB) repeat profile. | 1015 | 1057 | 13.474 |
| 146 | g13861.t1 | ProSiteProfiles | PS51120 | LDL-receptor class B (LDLRB) repeat profile. | 1190 | 1231 | 6.304 |
| 144 | g13861.t1 | ProSiteProfiles | PS51120 | LDL-receptor class B (LDLRB) repeat profile. | 1232 | 1275 | 9.251 |
| 143 | g13861.t1 | ProSiteProfiles | PS51120 | LDL-receptor class B (LDLRB) repeat profile. | 1327 | 1368 | 10.272 |
| 156 | g13861.t1 | ProSiteProfiles | PS50068 | LDL-receptor class A (LDLRA) domain profile. | 1461 | 1502 | 11.913 |
| 151 | g13861.t1 | ProSiteProfiles | PS50068 | LDL-receptor class A (LDLRA) domain profile. | 1506 | 1542 | 12.838 |
| 154 | g13861.t1 | ProSiteProfiles | PS50068 | LDL-receptor class A (LDLRA) domain profile. | 1549 | 1588 | 11.363 |
| 153 | g13861.t1 | ProSiteProfiles | PS50068 | LDL-receptor class A (LDLRA) domain profile. | 1590 | 1627 | 13.062 |
| 150 | g13861.t1 | ProSiteProfiles | PS50068 | LDL-receptor class A (LDLRA) domain profile. | 1629 | 1665 | 12.475 |
| 162 | g13861.t1 | ProSiteProfiles | PS50068 | LDL-receptor class A (LDLRA) domain profile. | 1670 | 1712 | 11.05 |
| 158 | g13861.t1 | ProSiteProfiles | PS50068 | LDL-receptor class A (LDLRA) domain profile. | 1712 | 1748 | 12.6 |
| 159 | g13861.t1 | ProSiteProfiles | PS50068 | LDL-receptor class A (LDLRA) domain profile. | 1760 | 1795 | 11.213 |
| 145 | g13861.t1 | ProSiteProfiles | PS51120 | LDL-receptor class B (LDLRB) repeat profile. | 2016 | 2059 | 5.051 |
| 141 | g13861.t1 | ProSiteProfiles | PS51120 | LDL-receptor class B (LDLRB) repeat profile. | 2060 | 2104 | 7.789 |
| 108 | g13861.t1 | SMART | SM00192 | LDLa_2 | 533 | 572 | 4.5E-10 |
| 106 | g13861.t1 | SMART | SM00192 | LDLa_2 | 574 | 615 | 1.5E-7 |
| 100 | g13861.t1 | SMART | SM00192 | LDLa_2 | 634 | 674 | 4.8E-9 |
| 104 | g13861.t1 | SMART | SM00192 | LDLa_2 | 680 | 716 | 1.5E-7 |
| 102 | g13861.t1 | SMART | SM00192 | LDLa_2 | 717 | 758 | 1.6E-5 |
| 112 | g13861.t1 | SMART | SM00179 | egfca_6 | 758 | 796 | 0.32 |
| 123 | g13861.t1 | SMART | SM00181 | egf_5 | 761 | 796 | 0.046 |
| 111 | g13861.t1 | SMART | SM00179 | egfca_6 | 797 | 836 | 1.3E-4 |
| 129 | g13861.t1 | SMART | SM00181 | egf_5 | 800 | 836 | 0.61 |
| 119 | g13861.t1 | SMART | SM00135 | LY_2 | 908 | 950 | 1.6E-4 |
| 113 | g13861.t1 | SMART | SM00135 | LY_2 | 952 | 995 | 1.5E-8 |
| 116 | g13861.t1 | SMART | SM00135 | LY_2 | 996 | 1037 | 5.2E-11 |
| 120 | g13861.t1 | SMART | SM00135 | LY_2 | 1038 | 1078 | 0.21 |
| 126 | g13861.t1 | SMART | SM00181 | egf_5 | 1105 | 1141 | 0.0066 |
| 114 | g13861.t1 | SMART | SM00135 | LY_2 | 1212 | 1254 | 9.3E-6 |
| 117 | g13861.t1 | SMART | SM00135 | LY_2 | 1309 | 1349 | 9.5E-7 |
| 127 | g13861.t1 | SMART | SM00181 | egf_5 | 1424 | 1463 | 1.2 |
| 99 | g13861.t1 | SMART | SM00192 | LDLa_2 | 1467 | 1503 | 1.8E-8 |
| 107 | g13861.t1 | SMART | SM00192 | LDLa_2 | 1506 | 1543 | 5.8E-12 |
| 109 | g13861.t1 | SMART | SM00192 | LDLa_2 | 1549 | 1589 | 3.4E-8 |
| 97 | g13861.t1 | SMART | SM00192 | LDLa_2 | 1590 | 1628 | 4.6E-11 |
| 105 | g13861.t1 | SMART | SM00192 | LDLa_2 | 1629 | 1666 | 2.7E-10 |
| 121 | g13861.t1 | SMART | SM00181 | egf_5 | 1629 | 1665 | 110.0 |
| 98 | g13861.t1 | SMART | SM00192 | LDLa_2 | 1670 | 1711 | 5.6E-5 |
| 101 | g13861.t1 | SMART | SM00192 | LDLa_2 | 1712 | 1749 | 7.2E-10 |
| 128 | g13861.t1 | SMART | SM00181 | egf_5 | 1712 | 1748 | 120.0 |
| 103 | g13861.t1 | SMART | SM00192 | LDLa_2 | 1760 | 1796 | 6.4E-5 |
| 122 | g13861.t1 | SMART | SM00181 | egf_5 | 1797 | 1833 | 0.87 |
| 110 | g13861.t1 | SMART | SM00179 | egfca_6 | 1834 | 1872 | 4.3E-9 |
| 125 | g13861.t1 | SMART | SM00181 | egf_5 | 1837 | 1872 | 5.9E-4 |
| 115 | g13861.t1 | SMART | SM00135 | LY_2 | 1992 | 2038 | 91.0 |
| 118 | g13861.t1 | SMART | SM00135 | LY_2 | 2040 | 2082 | 1.8 |
| 124 | g13861.t1 | SMART | SM00181 | egf_5 | 2153 | 2187 | 37.0 |
| 39 | g13861.t1 | SUPERFAMILY | SSF53383 | PLP-dependent transferases | 28 | 446 | 3.43E-107 |
| 51 | g13861.t1 | SUPERFAMILY | SSF57424 | LDL receptor-like module | 536 | 570 | 1.44E-6 |
| 40 | g13861.t1 | SUPERFAMILY | SSF57424 | LDL receptor-like module | 578 | 613 | 7.07E-7 |
| 43 | g13861.t1 | SUPERFAMILY | SSF57424 | LDL receptor-like module | 637 | 671 | 2.49E-6 |
| 41 | g13861.t1 | SUPERFAMILY | SSF57424 | LDL receptor-like module | 681 | 714 | 3.27E-6 |
| 52 | g13861.t1 | SUPERFAMILY | SSF57424 | LDL receptor-like module | 721 | 754 | 8.64E-6 |
| 53 | g13861.t1 | SUPERFAMILY | SSF57184 | Growth factor receptor domain | 755 | 1142 | 9.42E-8 |
| 38 | g13861.t1 | SUPERFAMILY | SSF63825 | YWTD domain | 845 | 1085 | 4.19E-36 |
| 37 | g13861.t1 | SUPERFAMILY | SSF63825 | YWTD domain | 1188 | 1387 | 1.83E-23 |
| 48 | g13861.t1 | SUPERFAMILY | SSF57424 | LDL receptor-like module | 1461 | 1500 | 7.2E-7 |
| 45 | g13861.t1 | SUPERFAMILY | SSF57424 | LDL receptor-like module | 1505 | 1542 | 8.12E-9 |
| 42 | g13861.t1 | SUPERFAMILY | SSF57424 | LDL receptor-like module | 1548 | 1584 | 2.23E-6 |
| 47 | g13861.t1 | SUPERFAMILY | SSF57424 | LDL receptor-like module | 1588 | 1623 | 1.96E-8 |
| 50 | g13861.t1 | SUPERFAMILY | SSF57424 | LDL receptor-like module | 1628 | 1664 | 3.14E-8 |
| 49 | g13861.t1 | SUPERFAMILY | SSF57424 | LDL receptor-like module | 1669 | 1713 | 7.72E-6 |
| 44 | g13861.t1 | SUPERFAMILY | SSF57424 | LDL receptor-like module | 1713 | 1747 | 1.27E-7 |
| 46 | g13861.t1 | SUPERFAMILY | SSF57424 | LDL receptor-like module | 1756 | 1790 | 2.49E-6 |
| 55 | g13861.t1 | SUPERFAMILY | SSF57196 | EGF/Laminin | 1800 | 1840 | 1.16E-5 |
| 54 | g13861.t1 | SUPERFAMILY | SSF57196 | EGF/Laminin | 1828 | 1872 | 8.38E-9 |
| 36 | g13861.t1 | SUPERFAMILY | SSF63825 | YWTD domain | 1886 | 2121 | 3.66E-18 |
| 96 | g13861.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 2203 | 2225 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
| GO:0005509 | calcium ion binding | MF |
| GO:0008483 | transaminase activity | MF |
| GO:0003824 | catalytic activity | MF |
| GO:0030170 | pyridoxal phosphate binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
