General information for g13861.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Alanine–glyoxylate aminotransferase 2-like.
Parent gene
- The parent gene g13861 is located on chr_1: 32888616..32895295 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13861 | g13861.t4 | TSS | g13861.t4 | 32885627 | 32885627 |
| chr_1 | g13861 | g13861.t4 | isoform | g13861.t4 | 32885783 | 32889378 |
| chr_1 | g13861 | g13861.t4 | exon | g13861.t4.exon1 | 32885783 | 32885850 |
| chr_1 | g13861 | g13861.t4 | cds | g13861.t4.CDS1 | 32885783 | 32885850 |
| chr_1 | g13861 | g13861.t4 | exon | g13861.t4.exon2 | 32885914 | 32886032 |
| chr_1 | g13861 | g13861.t4 | cds | g13861.t4.CDS2 | 32885914 | 32886032 |
| chr_1 | g13861 | g13861.t4 | exon | g13861.t4.exon3 | 32887027 | 32887264 |
| chr_1 | g13861 | g13861.t4 | cds | g13861.t4.CDS3 | 32887027 | 32887264 |
| chr_1 | g13861 | g13861.t4 | exon | g13861.t4.exon4 | 32887936 | 32888035 |
| chr_1 | g13861 | g13861.t4 | cds | g13861.t4.CDS4 | 32887936 | 32888035 |
| chr_1 | g13861 | g13861.t4 | exon | g13861.t4.exon5 | 32888147 | 32888401 |
| chr_1 | g13861 | g13861.t4 | cds | g13861.t4.CDS5 | 32888147 | 32888401 |
| chr_1 | g13861 | g13861.t4 | exon | g13861.t4.exon6 | 32888470 | 32889039 |
| chr_1 | g13861 | g13861.t4 | cds | g13861.t4.CDS6 | 32888470 | 32889039 |
| chr_1 | g13861 | g13861.t4 | exon | g13861.t4.exon7 | 32889100 | 32889378 |
| chr_1 | g13861 | g13861.t4 | cds | g13861.t4.CDS7 | 32889100 | 32889195 |
| chr_1 | g13861 | g13861.t4 | TTS | g13861.t4 | NA | NA |
Sequences
>g13861.t4 Gene=g13861 Length=1629
ATGACTGAAAGTGTCAAAGAATTGCTTCCAAAAAAGGAAACTATCGAACTTCGTAACAAA
CTTATTGGAAAATCATGTTCGTTATTCTATAAATCAGATCCTTTGAAAATCGTTCGAGGA
CAAGGACAATACATGTTTGATGAAGAAGGTCATAAATATTTAGATTGCATCAATAATGTA
GCAACGGTCGGGCATTGCCACCCAAAAGTCGTCGAAGCTGGCTCCAAACAGATGTCAATC
ATTTCAACAAATTCTCGATTTTTACATGATGAAATGATTTTATGCGCACAAAATCTAATA
AACCGTATGCCAGGCAATACTTTATCAGTATGCTATTTTGTTAATAGCGGTTCAGAAGCC
AATGATTTAGCTTTGCGATTAGCAAGAGCACATACGAAGCAACGCGATGTTATTACATTA
GACCATGCATATCATGGTCATCTTCTTGCCTGTATGGAAATTTCTCCATACAAGTTCAAT
CAATCAGATAATATTGATGTAAAGAAGCCAAATTATGTTCACATTGCATCATGTCCAGAT
ACTTATCGGGGAAAATATCGTGATAGTGACTATCCAGAATGTGAGTTGGGTGAAATGTAT
GCAAATGATGTGAAAGAAATTATTGAAAATGTCGAAAAAGAAGGTCGAGGTATTGCAGCA
TTCATTGCAGAGTCGTTACAAAGTTGTGGAGGGCAAATTATTTACCCAAAAGATTACTTC
AGAAAAGTTTTTAAAGCAGTACGTGCAAATGGAGGAGTTTGTATTGCTGATGAAGTTCAA
GTTGGGTTTGGGCGTGTCGGAATAAAGTATTGGGCATTTGAAACACAAGAAGTTGTTCCC
GACATTGTAACCGTTGCTAAACCAATGGGAAATGGGCATCCTGTCGGAGCTGTTATTTGC
ACAAAAGAAATTGCTGATAGTTTTACAAATACTAATGTGCAATATTTCAATACTTTTGGA
GGCAATCCAGTGTCATGTGCTATCGCTAATGCAGTGATGCAAGTCATAGAAGAGGAAAAA
CTTCAAGAAAATTGCTTAATTGTTGGTGATTATCTAATGCAACGATCAACAGAATTGATG
CGTAACTTTTCAATTATCGGAGATGTGAGAGGAATGGGCTTGTTTATTGGAATTGAGTTA
GTCAAAGATCGAAAGTTAAGAACACCTGCAACAGAAGAGGCAGCATTTGTAGTCAATCGA
ATGAAGAATATCCACAAAATTTTAGTGAGCTCAGATGGTCCAGATGAGAATGTTGTTAAA
TTGAAACCACCAATGGTTTTCAATAAACAAAATGCGGATGAATTTATTGCAGGATTTATC
GAATGTCTTCAACAGCTTGAAGAAAGAGATAAAATGAGAAAATTAACTACAACTCAATTG
CCATGTGCATTGACTGCATCTACAACCATCATGGAAAAGCGTGAACATACTGTAAAATCT
ATTTGAGATTAAATTAACAGAACTACTATTAACTAGTTTTAAGCAACTTTTATTATTTTA
TTATATTATATATGTACAAAAGAATATCATATTTTATTAAAAGAGAATTTAAATTTTAAG
CATAAATCCATAATTTTTTAAATAACGATCAAATTTCAAAAACAATTTGTAATTTTCTCT
TTAAAAAGT
>g13861.t4 Gene=g13861 Length=481
MTESVKELLPKKETIELRNKLIGKSCSLFYKSDPLKIVRGQGQYMFDEEGHKYLDCINNV
ATVGHCHPKVVEAGSKQMSIISTNSRFLHDEMILCAQNLINRMPGNTLSVCYFVNSGSEA
NDLALRLARAHTKQRDVITLDHAYHGHLLACMEISPYKFNQSDNIDVKKPNYVHIASCPD
TYRGKYRDSDYPECELGEMYANDVKEIIENVEKEGRGIAAFIAESLQSCGGQIIYPKDYF
RKVFKAVRANGGVCIADEVQVGFGRVGIKYWAFETQEVVPDIVTVAKPMGNGHPVGAVIC
TKEIADSFTNTNVQYFNTFGGNPVSCAIANAVMQVIEEEKLQENCLIVGDYLMQRSTELM
RNFSIIGDVRGMGLFIGIELVKDRKLRTPATEEAAFVVNRMKNIHKILVSSDGPDENVVK
LKPPMVFNKQNADEFIAGFIECLQQLEERDKMRKLTTTQLPCALTASTTIMEKREHTVKS
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Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g13861.t4 | CDD | cd00610 | OAT_like | 30 | 443 | 2.35483E-151 |
| 6 | g13861.t4 | Gene3D | G3DSA:3.90.1150.10 | Aspartate Aminotransferase | 34 | 437 | 1.9E-141 |
| 7 | g13861.t4 | Gene3D | G3DSA:3.40.640.10 | - | 67 | 340 | 1.9E-141 |
| 2 | g13861.t4 | PANTHER | PTHR45688:SF1 | ETHANOLAMINE-PHOSPHATE PHOSPHO-LYASE | 7 | 459 | 6.8E-193 |
| 3 | g13861.t4 | PANTHER | PTHR45688 | - | 7 | 459 | 6.8E-193 |
| 9 | g13861.t4 | PIRSF | PIRSF000521 | Transaminase_4ab_Lys_Orn | 29 | 153 | 4.1E-6 |
| 8 | g13861.t4 | PIRSF | PIRSF000521 | Transaminase_4ab_Lys_Orn | 128 | 446 | 1.9E-34 |
| 1 | g13861.t4 | Pfam | PF00202 | Aminotransferase class-III | 35 | 443 | 5.2E-81 |
| 5 | g13861.t4 | ProSitePatterns | PS00600 | Aminotransferases class-III pyridoxal-phosphate attachment site. | 254 | 292 | - |
| 4 | g13861.t4 | SUPERFAMILY | SSF53383 | PLP-dependent transferases | 28 | 446 | 7.67E-109 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008483 | transaminase activity | MF |
| GO:0003824 | catalytic activity | MF |
| GO:0030170 | pyridoxal phosphate binding | MF |
KEGG
Orthology
- This transcript has been annotated with K14286 (ethanolamine-phosphate phospho-lyase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
