General information for g13878.t96
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g13878 is located on chr_1: 33088389..33089650 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13878 | g13878.t96 | TTS | g13878.t96 | 33088289 | 33088289 |
| chr_1 | g13878 | g13878.t96 | isoform | g13878.t96 | 33088389 | 33089650 |
| chr_1 | g13878 | g13878.t96 | exon | g13878.t96.exon1 | 33088389 | 33089194 |
| chr_1 | g13878 | g13878.t96 | cds | g13878.t96.CDS1 | 33088389 | 33088958 |
| chr_1 | g13878 | g13878.t96 | exon | g13878.t96.exon2 | 33089245 | 33089650 |
| chr_1 | g13878 | g13878.t96 | TSS | g13878.t96 | 33089714 | 33089714 |
Sequences
>g13878.t96 Gene=g13878 Length=1212
ATGGCACCTGAAAAGCCACAAAAAAGTGATTCAAGACGTGAAGAAGTTGATTTAGAGACG
CAATTCATTCTTAGATTACCCGAGGAATATGCTGGAAAAGTAAAAATTTAAATTTACATT
TTTAAAAAATTTCCCTTTAAAAATGATTTAATTTTAGCTTAGAGAAGCTATTAGATCTGG
AGCACAAAACATAAAAGAACGTCTTGCTATTTCCTTAGAAAATGATTTAAGAAAAGGAAT
GGTTCGAATGGACGATCGATATTTATATGCAAAAGTTGTTGATTTACCTTGTATAATTGA
ATCTCATAAAACAATTGATAAGAAATCATTTTATAAAACTGCTGATATATGTCAAATGGT
AGTATGCAAAGAAGAGCCTGATCCTGTCACCGATGATGAATCACCATTTTATGTGAACAG
GTGAAAAATAAGAAGAAAGATCCAAACAAAGTTGATAAAAAATTTTTGTATCCACATGGC
ATAACTCCCTCATTAAAAAATGTTCGTAAAAGAAGATTTAGAAAAACACTGAAAAAGAAG
AATGTTGAGTTGCCTGAAATTGAGAAAGAAGTAAAGCGACTGTTGAGAACAGATAATGAA
GCAGTGAGTGTGAAGTGGGAAATTATTGAAAGTGAAGAGCCAATGGAACCTGAGCAAGGT
CGAGAATCGCCAGTTAAAAGTAAAAAGCAAAGTGGTGCTAAAGGTAGAGAAGCAAAAAGC
AAGAAAGAAACATTACCTGTTGATGAACATCACATTTTCGGTGAAGAGGTGTCAGATTCA
GAAGAAGAGGACATAAATGTGAATGAAACAGTACCCGATTTAGATATTGATGAAGATTCT
AGAAGTCGTTTCAGTGATTCAAATTCAATGATGCAAGGACTTCAATCGGCATCAAACAGT
CAAATGATGGGCGATTTCAGCAAGACTGAATTCAGTTCATCGATGTTTGAGGATGACGCT
GGTGCAGGAACTAGCTCACAACATATGGAAGAAGAAGAATCAATGGACTTTATGACAGCA
AAAGAAAACTCAAGAGCAAGTTCATTACGTCGTGAACTGCAAGAACTAAAAGTTAGTCAA
TCTCAGATTGAGCAAGAAATTCAAACAATTGACAATAAGAAGCTTAAAGAGCGGCTTCAA
GAAGATCTCGAGAACATTATGGGTAAAATAATAATGAAACAACTTGAGCTTCAAGAATTT
GAAGACCAGTAA
>g13878.t96 Gene=g13878 Length=189
MEPEQGRESPVKSKKQSGAKGREAKSKKETLPVDEHHIFGEEVSDSEEEDINVNETVPDL
DIDEDSRSRFSDSNSMMQGLQSASNSQMMGDFSKTEFSSSMFEDDAGAGTSSQHMEEEES
MDFMTAKENSRASSLRRELQELKVSQSQIEQEIQTIDNKKLKERLQEDLENIMGKIIMKQ
LELQEFEDQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g13878.t96 | Coils | Coil | Coil | 132 | 159 | - |
| 3 | g13878.t96 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 88 | - |
| 6 | g13878.t96 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 43 | - |
| 5 | g13878.t96 | MobiDBLite | mobidb-lite | consensus disorder prediction | 44 | 59 | - |
| 2 | g13878.t96 | MobiDBLite | mobidb-lite | consensus disorder prediction | 71 | 88 | - |
| 4 | g13878.t96 | MobiDBLite | mobidb-lite | consensus disorder prediction | 104 | 134 | - |
| 1 | g13878.t96 | MobiDBLite | mobidb-lite | consensus disorder prediction | 110 | 134 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
