General information for g13897.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g13897 is located on chr_1: 33197009..33199161 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13897 | g13897.t1 | TTS | g13897.t1 | 33194378 | 33194378 |
| chr_1 | g13897 | g13897.t1 | isoform | g13897.t1 | 33194487 | 33199161 |
| chr_1 | g13897 | g13897.t1 | exon | g13897.t1.exon1 | 33194487 | 33196920 |
| chr_1 | g13897 | g13897.t1 | cds | g13897.t1.CDS1 | 33194487 | 33196920 |
| chr_1 | g13897 | g13897.t1 | exon | g13897.t1.exon2 | 33197009 | 33198024 |
| chr_1 | g13897 | g13897.t1 | cds | g13897.t1.CDS2 | 33197009 | 33198024 |
| chr_1 | g13897 | g13897.t1 | exon | g13897.t1.exon3 | 33198210 | 33198543 |
| chr_1 | g13897 | g13897.t1 | cds | g13897.t1.CDS3 | 33198210 | 33198543 |
| chr_1 | g13897 | g13897.t1 | exon | g13897.t1.exon4 | 33198617 | 33199161 |
| chr_1 | g13897 | g13897.t1 | cds | g13897.t1.CDS4 | 33198617 | 33199161 |
| chr_1 | g13897 | g13897.t1 | TSS | g13897.t1 | NA | NA |
Sequences
>g13897.t1 Gene=g13897 Length=4329
ATGGTTGATTCAAATAAATTTATTACAAATTTTATAAAATGTACTCAAGATAAACGTCAA
GATAAATTAAAACTGCTTGAAGCAAAAAATATCAGTGATATTGTTGTAGAATTAGCTAAC
AATAAAAACTCTGATTGCTTGATCCTTTGGAATGCAATATGCGAAATAGAAGATGAGAAA
AAGTTGTTTAAAATCATTGAGGAAGTACTGCCGAAGCTTAATAGGGATGCTCTTTCATTG
CGAGAATATCAAGATTTCATTAATCGTTTTTTACTTCAATTGCCAAATAAATCACTCAAA
TTTTCACTAAAAGTCTCTCTTTTATGTTCGGAATGTCTTAAGATTGGTGACCAAAGAGCT
CCGTTTTGGAAAGACATATTGCCACTTTGTTTGAAAATTTTACAAAAAAATAGTACAAAA
GTGCTTGAAACGGAAGATAATGAATCAACAATGACAGGAAAAGAAGCAGCAAATGACATG
ATTAAAAACATCCTAAAAAGTGATTTTGCTTTAGCCACACTGACCACATTGATGTCGATG
TTCAAAGATATCGAAATTTCACCCACACAGCAAGATTCTTTAGTTATAAAAGTATGTGGC
CTCATTGAAAAAGTAAATCATGAAGATATTGGCAATTTGTCACTCGTGATCTTTCAACAA
GCTAATTATAATCAAATAATAATGCCATTGCTTGCACTAGACAAATATTTTTATAAGCGC
CGATATAGATTTCTTCTTAACGAATATGAGAGTGCCCCTGATGATATTGAAGAAACAAGT
TCAGTAGGATTAGTTCATGCAGAAGAAACAACAATTTATCACTTTCAGAATGTAGCAGAG
TTCACAAATATAGAAAAGAATATAGCTACAGCATTAAAGGCTCTTGAGTTTACTCCACAT
TTTGTGCTTTCACCTTTCCTTTCTACAATTTTGGTATCAATTGCTAAAATATCTTCCTCG
GTACAAGGTAATTTTCGACTCAATCAATCTACTATTTTGCCATTCATGAAGCAAGTTTTT
AAATTCAATGAAGAGCATCGGCAAATATTAAAGTTTAGTGGATGGGCAAAATCAATTGAT
CCGATTGAAGCAGTGAATACTGACTCATTATTGAGGATGTTGAAAGAAAATACATGCTCA
TTGCGACAAGATGTTGCTTTAAATGGTCTTTTCGGCTTGGTTTTCTTGTTATTGAAAACA
AAAGCGTCACCAGCTCTAAATAAATTTGCCATCGATTTTCTAAATGACATTATCAAAAAC
CGAACAGAATTCACTTCAGACATTTTACGAATCGTGGTAAAAATGCTTTTCTGTGAAAAG
AATAAGGGACCAATAATTGAGTGTTTCTCCAGTCTTGTGCAAAATCGACATCTCGATGTA
AGTGCAAGTGAAATGGCATTGCAGAAACTGATAGAAGACTTACCTGAATTAGATCTGGAT
ACCGCATTGTCAATTGAAAGTGTTATTTTCACAGCAATAACAAAATCTATTTCTCTTAGA
GATCTCATGATAGAAGTGATGAAAAAAGCAATGTATCAACGAAATGTTGAAATTCGAAAA
ATGGCCATTTTTTCATTCTGCATCATGTTGAGAAAATTTACGAAGCCATCATCACGTTTA
AGTGCATCTACTTCAACTCAGTCTCGCTTCTCACACAATATATCAATGTTTTCGTTGACA
CAATCACAAATTGCCATCAGCGCCAATTCTAACCGAAATAACAACATACGTCAAGTAGAA
ATTATTATGCTAGAGATTCTGGGATTGCTGAGAAAATGTTTTTCTGAAAACAATGAGATA
AAAGTCATGCTATATGAGTCGCTTCTTAATTCAATTCAAGCCAATAGCTTCATTGTTTCA
AACGTTTTTGAATTTCTCAACGGACACTTTCGAATGTACTTTGATTGTGATGAGGAAATG
CTTATGGACTTTGACAAACTTTTTAAACAAGACGAAGAAAATGATGATGGAAATTTAATT
ATAATGGATGATTTAGGGCAGTTACTGAAATTTATGATAAGTTGTATAGTCATTACGAAA
GAGCATCATCAAAAGTTAAATTGCGATGTAAATATTTATGAAGAAATCCTATCAAAATTA
ATTGAAAAATGCATAAATGCGACAAAAGAACAGTTGCATGTTTTCAGTAATATTGATCAA
AAGAATTTTATTATAATGGCGCAGTTTCTCAATTGTTGCGAAGCTCTTATGCTTTATTGC
TATTATCAAATAACAACACATAATAATGAAATGTATGTGACAAAGGTTTTAATGCTTTTT
GAAAAATATCTGGAAATACAAAAAGAACATAAAAAGATGCTTGAAGCCAGTAACAAGAAA
TCAACAAAATCAGATAAAAAAGCAGCAACAATGCCTGATGTAGAATTGAAAAAAAGTACA
CAAAAAATGGAGACAAGGACAAAATGTATATGGAATCTCAAAGAGTGCGTACCTTTTCTT
AAAGCAATTTTTAATGACAATCAAAACGAAAGAATGAAAGAATTTAAACAAAACAAGGAT
TTTTGTCATTTTGTTTTAATGACGACAAGTCAAAAACTTGCAGAATTAGAAACTTCATCA
GAGCATAGTAAGATGAAATATAGTCGTTCAATCTTTGATTCATTTCTTTCATGCTCAACA
ATTTTCTACCAGCAATTACACACAGACAATTTCATTTCACTTCACAATAATTATAGCAGT
GATTGTGCTGCATCACTTAGTAATGCATTCAAGTATTTAATACAAGCTATGGAAACGACG
TTCACTGGAAAAAGTGAAAAGTTTAATCAGTTTCTTAAATCTATGACACAAACGAACGTG
TATAACAATCATAGTCACAATCAGGATGATGAAAATGATTCCATGTTGCTTGAAGTTATA
AAAAAAATTCATCAAATCATTGAGTGGATTTTTGAACAAGAAAAGAAAAGTGTTGAATTT
ATAGAAAATTCTTCAAGCATCACTTTAATTCTCAACAATCTCTTCACATCTCTTCAATTA
CTCTATCGTAAGTTCAACTCAGCAACAATTAGTCGAGAATGCTTTAATTGGATATTAAAT
TTCGCGAAGAAAACTAATGTGAAAAATAAATCTATTGCTGCTGTTGTAATAAAGCTTTTC
ATACAATGTATCAATCAACATGAAAATGCTTTATTAATAGATTGTGTTGCACATAAGATT
GCAAGTTGTTATCAATATAGACGAACAATTAATGAACCAGAATGTGCATCACAGAATAAT
TTTGCCATTATAACGAAACAAGCTGGTGTTGTTGATGAAGCCTTTTCAGAATTTATAGAA
TTCATAAAGGATCAAATACTTGTCGTTGAAATCTACATTAAGAGATCAAACAGCTTCAAT
GCACACGCTCAACTTAGAGGTCAAGAGTCTCATGATGACACTTGTACTGCACTACAATCA
CTTGCAACGGCAATTTGTACGAAGGTAATTTCATTGGGAAAGTCAATTGAGCGAATTGCA
AGCTGCAAATTTCAAATCTCAACACGTAACATTGAAAGAGTTGCTGGCATCATTAAACTT
TATTACAATTGTCTTGTAAACTTAATGAAACATTTCCGTAAACATCATGATATCAAGAAC
ATCAATTGCGAATCTATTGGTTTAGAAAATCTGATTAAATATTCTAAGAAATTTGCTGCT
TGTGTTTACAGCATAGCACCTTACATTGAAAATGCTGCGGAGGAGGAATTCGATAAAGGA
AAGAAAGACGATTTAAAAGCACGCACAAAAAAGCGTGACGCTATAATGAATAAAGAAACG
AAAACAATTCCAAGAATGATATTTTTGATCGAGACCTTTAATACACAAGTTTTAAATTTT
GATGCAGCTGCAAAAACAACATTGTCAAAACATTTGCATCCTGGTGAAGTGCGTGATTTT
CACATTGAAAATAAATTACTTCGAGATGCAATTGTGCGAAGTCAAGCAAGTGCGAGAAGT
CAAACATTTGAAAATGACGATGATGATGATGATGTTAGCATGAATGAAACAAAATCGAAT
GAAACTCAACAATCGAGTGATAATGAAAATATTCAACCAAATAAGAAGCGTAAGCGACGT
TTAGCATCAACAACTTCTTCCTCGTCATCTACAAATAATTCAAGTGATGAGGAAGAAAAC
AATGCATCAGGAAATGAATCGTCAGAGGAAAATGATAGTCCACCAAAGAAAGCACCTAAA
CGACAACAAAAGCCAACTATTCGTGTACGTTTGGAAAAAAATGCACGTGTTGCAAGAGGT
AGAGAAAAACGAATGACAGAAGCTCCACCGAAGGCAACAGGTAAAAGAGGAGGCCGTAAA
AAGAAATAA
>g13897.t1 Gene=g13897 Length=1442
MVDSNKFITNFIKCTQDKRQDKLKLLEAKNISDIVVELANNKNSDCLILWNAICEIEDEK
KLFKIIEEVLPKLNRDALSLREYQDFINRFLLQLPNKSLKFSLKVSLLCSECLKIGDQRA
PFWKDILPLCLKILQKNSTKVLETEDNESTMTGKEAANDMIKNILKSDFALATLTTLMSM
FKDIEISPTQQDSLVIKVCGLIEKVNHEDIGNLSLVIFQQANYNQIIMPLLALDKYFYKR
RYRFLLNEYESAPDDIEETSSVGLVHAEETTIYHFQNVAEFTNIEKNIATALKALEFTPH
FVLSPFLSTILVSIAKISSSVQGNFRLNQSTILPFMKQVFKFNEEHRQILKFSGWAKSID
PIEAVNTDSLLRMLKENTCSLRQDVALNGLFGLVFLLLKTKASPALNKFAIDFLNDIIKN
RTEFTSDILRIVVKMLFCEKNKGPIIECFSSLVQNRHLDVSASEMALQKLIEDLPELDLD
TALSIESVIFTAITKSISLRDLMIEVMKKAMYQRNVEIRKMAIFSFCIMLRKFTKPSSRL
SASTSTQSRFSHNISMFSLTQSQIAISANSNRNNNIRQVEIIMLEILGLLRKCFSENNEI
KVMLYESLLNSIQANSFIVSNVFEFLNGHFRMYFDCDEEMLMDFDKLFKQDEENDDGNLI
IMDDLGQLLKFMISCIVITKEHHQKLNCDVNIYEEILSKLIEKCINATKEQLHVFSNIDQ
KNFIIMAQFLNCCEALMLYCYYQITTHNNEMYVTKVLMLFEKYLEIQKEHKKMLEASNKK
STKSDKKAATMPDVELKKSTQKMETRTKCIWNLKECVPFLKAIFNDNQNERMKEFKQNKD
FCHFVLMTTSQKLAELETSSEHSKMKYSRSIFDSFLSCSTIFYQQLHTDNFISLHNNYSS
DCAASLSNAFKYLIQAMETTFTGKSEKFNQFLKSMTQTNVYNNHSHNQDDENDSMLLEVI
KKIHQIIEWIFEQEKKSVEFIENSSSITLILNNLFTSLQLLYRKFNSATISRECFNWILN
FAKKTNVKNKSIAAVVIKLFIQCINQHENALLIDCVAHKIASCYQYRRTINEPECASQNN
FAIITKQAGVVDEAFSEFIEFIKDQILVVEIYIKRSNSFNAHAQLRGQESHDDTCTALQS
LATAICTKVISLGKSIERIASCKFQISTRNIERVAGIIKLYYNCLVNLMKHFRKHHDIKN
INCESIGLENLIKYSKKFAACVYSIAPYIENAAEEEFDKGKKDDLKARTKKRDAIMNKET
KTIPRMIFLIETFNTQVLNFDAAAKTTLSKHLHPGEVRDFHIENKLLRDAIVRSQASARS
QTFENDDDDDDVSMNETKSNETQQSSDNENIQPNKKRKRRLASTTSSSSSTNNSSDEEEN
NASGNESSEENDSPPKKAPKRQQKPTIRVRLEKNARVARGREKRMTEAPPKATGKRGGRK
KK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g13897.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 775 | 797 | - |
| 7 | g13897.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1317 | 1442 | - |
| 10 | g13897.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1363 | 1389 | - |
| 8 | g13897.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1390 | 1434 | - |
| 6 | g13897.t1 | PANTHER | PTHR21818 | BC025462 PROTEIN | 14 | 1403 | 1.9E-92 |
| 2 | g13897.t1 | Pfam | PF14675 | FANCI solenoid 1 | 60 | 279 | 1.2E-21 |
| 5 | g13897.t1 | Pfam | PF14676 | FANCI solenoid 2 | 399 | 527 | 8.4E-17 |
| 1 | g13897.t1 | Pfam | PF14680 | FANCI helical domain 2 | 556 | 768 | 2.0E-20 |
| 3 | g13897.t1 | Pfam | PF14677 | FANCI solenoid 3 | 810 | 1040 | 6.1E-18 |
| 4 | g13897.t1 | Pfam | PF14678 | FANCI solenoid 4 | 1069 | 1307 | 5.4E-31 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006281 | DNA repair | BP |
KEGG
Orthology
- This transcript has been annotated with K10895 (fanconi anemia group I protein)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
