General information for g13897.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g13897 is located on chr_1: 33197009..33199161 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13897 | g13897.t2 | isoform | g13897.t2 | 33197009 | 33198210 |
| chr_1 | g13897 | g13897.t2 | exon | g13897.t2.exon1 | 33197009 | 33197478 |
| chr_1 | g13897 | g13897.t2 | cds | g13897.t2.CDS1 | 33197477 | 33197478 |
| chr_1 | g13897 | g13897.t2 | exon | g13897.t2.exon2 | 33197592 | 33198210 |
| chr_1 | g13897 | g13897.t2 | cds | g13897.t2.CDS2 | 33197592 | 33197898 |
| chr_1 | g13897 | g13897.t2 | TSS | g13897.t2 | NA | NA |
| chr_1 | g13897 | g13897.t2 | TTS | g13897.t2 | NA | NA |
Sequences
>g13897.t2 Gene=g13897 Length=1089
GGTGAGATGAAGAAAATTCCCTCTTCTACATTCATTCATTCATTTCATTATGTCAGGGTT
GAAGATTCTTTATGAATTTTTATTTTATACCTTTGAAAATTTTATCAACTCTGTATTTTA
TTGGTGCTGATATATATTTTGATGTAATGAATTATTTATTCATGAATTATTTTTCATTCT
ATTTAGGCTCTTGAGTTTACTCCACATTTTGTGCTTTCACCTTTCCTTTCTACAATTTTG
GTATCAATTGCTAAAATATCTTCCTCGGTACAAGGTAATTTTCGACTCAATCAATCTACT
ATTTTGCCATTCATGAAGCAAGTTTTTAAATTCAATGAAGAGCATCGGCAAATATTAAAG
TTTAGTGGATGGGCAAAATCAATTGATCCGATTGAAGCAGTGAATACTGACTCATTATTG
AGGATGTTGAAAGAAAATACATGCTCATTGCGACAAGATGTTGCTTTAAATGGTCTTTTC
GGCTTGGTTTTCTTGTTATTGAAAACAAAAGCGTCACCAGCTCTAAATAAATTTGCCATC
GATTTTCTAAATGACATTATCAAAAACCGAACAGAATTCACTTCAGACATTTTACGAATC
GTGGTAAAAATGCTTTTCTGAATTAGATCTGGATACCGCATTGTCAATTGAAAGTGTTAT
TTTCACAGCAATAACAAAATCTATTTCTCTTAGAGATCTCATGATAGAAGTGATGAAAAA
AGCAATGTATCAACGAAATGTTGAAATTCGAAAAATGGCCATTTTTTCATTCTGCATCAT
GTTGAGAAAATTTACGAAGCCATCATCACGTTTAAGTGCATCTACTTCAACTCAGTCTCG
CTTCTCACACAATATATCAATGTTTTCGTTGACACAATCACAAATTGCCATCAGCGCCAA
TTCTAACCGAAATAACAACATACGTCAAGTAGAAATTATTATGCTAGAGATTCTGGGATT
GCTGAGAAAATGTTTTTCTGAAAACAATGAGATAAAAGTCATGCTATATGAGTCGCTTCT
TAATTCAATTCAAGCCAATAGCTTCATTGTTTCAAACGTTTTTGAATTTCTCAACGGACA
CTTTCGAAT
>g13897.t2 Gene=g13897 Length=102
MKQVFKFNEEHRQILKFSGWAKSIDPIEAVNTDSLLRMLKENTCSLRQDVALNGLFGLVF
LLLKTKASPALNKFAIDFLNDIIKNRTEFTSDILRIVVKMLF
Protein features from InterProScan
No InterPro annotations for this transcript.
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
