General information for g13899.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g13899 is located on chr_1: 33201281..33201855 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13899 | g13899.t3 | isoform | g13899.t3 | 33199835 | 33201281 |
| chr_1 | g13899 | g13899.t3 | exon | g13899.t3.exon1 | 33199835 | 33200955 |
| chr_1 | g13899 | g13899.t3 | cds | g13899.t3.CDS1 | 33200856 | 33200955 |
| chr_1 | g13899 | g13899.t3 | exon | g13899.t3.exon2 | 33201007 | 33201281 |
| chr_1 | g13899 | g13899.t3 | cds | g13899.t3.CDS2 | 33201007 | 33201194 |
| chr_1 | g13899 | g13899.t3 | TSS | g13899.t3 | 33201949 | 33201949 |
| chr_1 | g13899 | g13899.t3 | TTS | g13899.t3 | NA | NA |
Sequences
>g13899.t3 Gene=g13899 Length=1396
AATCTATTAGTAAAATATTCTTTATTTGATTTTCTCTCACTTATATTCTTAAATCAAGTT
TTTACGAAAAAGCTGTATATAATAATAATGAAATTTAGATCAAGTAGAATTAATATAAAG
GAATGTGTTCTCAAAATACATGGAAGTGATCAAGAGTCATCATCCATTACAACGTCTCCC
TCTTCATTATCTTCTTCTATATCTATTTCAACTCCTTTGATAAGTTTTGAGATAATTTGC
ACTGTCGTTTTCGAATTATCAGAAATGTTCAAACCAAAAACTTACTCTTCTAATTCTTTT
GTTTCTGTTAAATCAATCATTTTGGTGTCAACATTCAGTTTTTCAGAATACTTTAGAATT
CCATTCAAAGAGTGAATGATTGATGAATTATTTATAAGGACTTTTGCAGGATCTTCCATG
ATGTTCACTCCAATACCACAGTTTTCAATTTCACTGTTGTTTAATTCTAACTTTGATTGC
TCTATATTAATGCCAATTGAGAAGTTTGATATTTTACAATTAATAAGAGTTAAACAACTA
TCTCCTGAAACATTAAACGCTTCTGCAACGCTTGATAGATCCGAACCAATTACTAAGCAA
TTTTTAAGCACCACCATTCCACTTTTAATTAAAAAACCTGTTTGAACATTTTTGCAATCA
ATGATTAAATTTTCAAATCGTACATCTCCATCAATGACAAAGAGCAGCGAAGAATCTTCT
TTTGAAGCAATTATTGCATATTCTGTATCTGACTTGTCAAGATTAATAGAGTCAAATGAT
ATCTTTGTTACACCACTCAATAGAATGTTTCCATTAATATAATCCAAGAAATTTAATGTA
TATTTTCCATTTGGAATAAATATCTCCGATTCTGATGTAGCATATGTAATTGTATCAGTT
AACGATGTCGTCCAATTTACAGCAGTTTGAGAAGAAATTTTTTCTTTCAGTTGTTCAAGT
AATTTTACTTGCTCGTTTATTGTTCCGTTTGTTGTTAATACGTAAGTTTTCTTAGTGTCT
TCATGTTTTCGACCGAATTTAATTAGTTCATAAGCATCACGCATATCTGGATTCATCAGT
ATCTCAAATTCATTTTTGATTTTGTTCATTCGTAGATGTAGTTTTAAAAGTTTGGCAATT
GTCTCTTTTGAGTCTTTCTTTTCTTCTTCAAGTTCATCAATAGAGTTATTCAATGCCTCT
CGTTTAAATTGTATGTTTTTCACCTCCGCAATGATTTGTCGAACATAAGATGACATTGCT
TTGCTTAGTTGCTTGTTTTTTAAATCATAAAATAGTTTTACCCGAGGAATTAGATTTTTA
GTTGCAAAGTCATCATCGTTATCAAATGGAAGATACACATAGTTGAAGAAAAATCGAAAA
CTGTCTAAATGTTTTG
>g13899.t3 Gene=g13899 Length=95
MKFRSSRINIKECVLKIHGSDQESSSITTSPSSLSSSISISTPLISFEIICTVVFELSEM
FKPKTYSSNSFVSVKSIILVSTFSFSEYFRIPFKE
Protein features from InterProScan
No InterPro annotations for this transcript.
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
