General information for g13901.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative 5’-deoxynucleotidase HDDC2.
Parent gene
- The parent gene g13901 is located on chr_1: 33203151..33204178 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13901 | g13901.t2 | TTS | g13901.t2 | 33202011 | 33202011 |
| chr_1 | g13901 | g13901.t2 | isoform | g13901.t2 | 33202874 | 33203699 |
| chr_1 | g13901 | g13901.t2 | exon | g13901.t2.exon1 | 33202874 | 33203699 |
| chr_1 | g13901 | g13901.t2 | cds | g13901.t2.CDS1 | 33203151 | 33203639 |
| chr_1 | g13901 | g13901.t2 | TSS | g13901.t2 | 33204422 | 33204422 |
Sequences
>g13901.t2 Gene=g13901 Length=826
ATAAAACGCACAGGCTGGGTGCTGAGAGATGTTCATGATCCCGAGACGATATCTGGTCAT
ATGTATAGAATGTCAGTAATGTCATTTCTCATACCAGAGGATATGAAACTGAATCGCATC
AAATGTATGAAATTAGCTTTAATTCACGATTTGGCAGAGAGTTTAGTAGGCGACATTACT
CCTTATTGTGGCATTAGTAAGCAAGAAAAGAGGCTACGTGAACACAAAGCAATTTTAGAA
ATCTGTAGTTTGTTAGATCAAACTGGCAGCGAAGAAATACTAAAACTTTTCGAAGAGTAT
GAGAATCAAGAGACAGCTGAAGCTCAATTAGTTAAAGATTTTGATCTTTATGACATGGTG
CTACAAGCATTTGAATACGAGAAGAGAGATGAAAAACCCAAATTGCATGAGGAATTTTTT
GTGAATACAAAAGGTAGATTCAAAACTGAATTCGTTCGTAAGCTTGTAGAAGAGCTTCAT
AAGCAGAGAGAAGAATATTACGAGAATTTCACATCAGACATGAAAAAGAAAAACCATAGT
GCAAGTTGATCATCCGAGGGGCAATCGTAAAATACAATACTTAAATCTATATTTAGCTAG
CTCAAAACACTCAAAAAAAGGAAAGATGAGAAAAGAGTTGCTTTAATTTTTATTTCATAT
ATTTTTTGCTTAACTTAAACATGATCTCCATTATAGAACGAATTATTTCTTTTTCTCTTT
AATTTGCTTTCATGAATCAGTTTTTTCTTTGAGCGAGTGTCAAATTTCGTTCTATAGCAC
AAGGATCTTATTTATTATTTTAAAGTATAATCAAATTTTTTAGATT
>g13901.t2 Gene=g13901 Length=162
MYRMSVMSFLIPEDMKLNRIKCMKLALIHDLAESLVGDITPYCGISKQEKRLREHKAILE
ICSLLDQTGSEEILKLFEEYENQETAEAQLVKDFDLYDMVLQAFEYEKRDEKPKLHEEFF
VNTKGRFKTEFVRKLVEELHKQREEYYENFTSDMKKKNHSAS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g13901.t2 | Gene3D | G3DSA:1.10.3210.10 | Hypothetical protein af1432 | 1 | 156 | 0 |
| 2 | g13901.t2 | PANTHER | PTHR11845 | UNCHARACTERIZED | 1 | 147 | 0 |
| 1 | g13901.t2 | Pfam | PF13023 | HD domain | 1 | 133 | 0 |
| 3 | g13901.t2 | SUPERFAMILY | SSF109604 | HD-domain/PDEase-like | 1 | 150 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0002953 | 5’-deoxynucleotidase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
