General information for g13902.t14
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A.
Parent gene
- The parent gene g13902 is located on chr_1: 33207729..33208355 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13902 | g13902.t14 | isoform | g13902.t14 | 33206628 | 33208018 |
| chr_1 | g13902 | g13902.t14 | exon | g13902.t14.exon1 | 33206628 | 33206831 |
| chr_1 | g13902 | g13902.t14 | cds | g13902.t14.CDS1 | 33206687 | 33206831 |
| chr_1 | g13902 | g13902.t14 | exon | g13902.t14.exon2 | 33206904 | 33207172 |
| chr_1 | g13902 | g13902.t14 | cds | g13902.t14.CDS2 | 33206904 | 33207172 |
| chr_1 | g13902 | g13902.t14 | exon | g13902.t14.exon3 | 33207556 | 33207661 |
| chr_1 | g13902 | g13902.t14 | cds | g13902.t14.CDS3 | 33207556 | 33207661 |
| chr_1 | g13902 | g13902.t14 | exon | g13902.t14.exon4 | 33207729 | 33208018 |
| chr_1 | g13902 | g13902.t14 | cds | g13902.t14.CDS4 | 33207729 | 33208018 |
| chr_1 | g13902 | g13902.t14 | TTS | g13902.t14 | 33208453 | 33208453 |
| chr_1 | g13902 | g13902.t14 | TSS | g13902.t14 | NA | NA |
Sequences
>g13902.t14 Gene=g13902 Length=869
TGAATTGTTATGGATGCTCAATATGTCTTGTAAATTCGCATTTAGCAGCTCACGATGAAA
TGATTGAAGAGCGTATTAATGACTATCAACGAATTAAAGAAGCGATCAATTTCAGTGTTA
AATTTAACAAAAACATTTATGATCACGATTATGTCTTTTGGTTTGGTGATCTTAATTTTA
GATTGTATGATCCATATAATCAAAATCAATTATCAATGGCAATGTGTGAAGGTCGTGCTT
TTTCAGAATTAGTTGAGAGATTGCCACAATTCCCACCAACATTCAAATTCGTACAAGATT
CCAATGATTATGATATGAAACGAAGACCAGCATGGTGTGATAGAATTCTTTACAAAGGTC
GAACGAAAATTCTTAAAAATTGCTCTCTTCATCTCGAACAAATTTCGTACAAGAGCCATC
CAAATTACAATATTAGCGATCACAAACCAGTATCGTCTGAGTTTAAGATTAATGCACCAG
ATGATGATATTACTGATTTGATAATTAAGTTTAAACCACTATCTGTGTGGAATAACAGCG
AACAAAATGAAGTTGAATACATCTTGCCACCTAATTATGTTGGTGGAAATGCAGATTGGA
TTGGTGTTTATCCTGAAGATTTTACTGGTTTTGATGAATACATTGGTTATGAGTATACCG
ACACCGCTGATGAAAAGGCTCAGCCAACTTCCCGCACAATAAAACTCAACTTTTCGGATT
CAATAAATTTACCTGTCGGTGATGGTAAATTTGTGTTGCTTTACTTCCAATCAACAGGAA
TGAGAGGATATTCAAGTATGGTTGGAATGAGCGAACCATTCCCAGCCATTAAAAGATGCC
CATCACCACGACCTGATACAATTGATTAA
>g13902.t14 Gene=g13902 Length=269
MIEERINDYQRIKEAINFSVKFNKNIYDHDYVFWFGDLNFRLYDPYNQNQLSMAMCEGRA
FSELVERLPQFPPTFKFVQDSNDYDMKRRPAWCDRILYKGRTKILKNCSLHLEQISYKSH
PNYNISDHKPVSSEFKINAPDDDITDLIIKFKPLSVWNNSEQNEVEYILPPNYVGGNADW
IGVYPEDFTGFDEYIGYEYTDTADEKAQPTSRTIKLNFSDSINLPVGDGKFVLLYFQSTG
MRGYSSMVGMSEPFPAIKRCPSPRPDTID
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g13902.t14 | Gene3D | G3DSA:3.60.10.10 | - | 1 | 152 | 0e+00 |
| 6 | g13902.t14 | Gene3D | G3DSA:2.60.40.2840 | - | 153 | 263 | 2e-07 |
| 2 | g13902.t14 | PANTHER | PTHR11200 | INOSITOL 5-PHOSPHATASE | 3 | 254 | 0e+00 |
| 3 | g13902.t14 | PANTHER | PTHR11200:SF127 | PHOSPHATIDYLINOSITOL 4,5-BISPHOSPHATE 5-PHOSPHATASE A | 3 | 254 | 0e+00 |
| 1 | g13902.t14 | Pfam | PF17751 | SKICH domain | 149 | 255 | 0e+00 |
| 4 | g13902.t14 | SUPERFAMILY | SSF56219 | DNase I-like | 3 | 148 | 0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
