General information for g13902.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A.
Parent gene
- The parent gene g13902 is located on chr_1: 33207729..33208355 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13902 | g13902.t3 | TSS | g13902.t3 | 33204549 | 33204549 |
| chr_1 | g13902 | g13902.t3 | isoform | g13902.t3 | 33204614 | 33208018 |
| chr_1 | g13902 | g13902.t3 | exon | g13902.t3.exon1 | 33204614 | 33204651 |
| chr_1 | g13902 | g13902.t3 | exon | g13902.t3.exon2 | 33205312 | 33205488 |
| chr_1 | g13902 | g13902.t3 | exon | g13902.t3.exon3 | 33206186 | 33206523 |
| chr_1 | g13902 | g13902.t3 | exon | g13902.t3.exon4 | 33206600 | 33207172 |
| chr_1 | g13902 | g13902.t3 | cds | g13902.t3.CDS1 | 33206627 | 33207172 |
| chr_1 | g13902 | g13902.t3 | exon | g13902.t3.exon5 | 33207556 | 33207661 |
| chr_1 | g13902 | g13902.t3 | cds | g13902.t3.CDS2 | 33207556 | 33207661 |
| chr_1 | g13902 | g13902.t3 | exon | g13902.t3.exon6 | 33207729 | 33208018 |
| chr_1 | g13902 | g13902.t3 | cds | g13902.t3.CDS3 | 33207729 | 33208018 |
| chr_1 | g13902 | g13902.t3 | TTS | g13902.t3 | 33208453 | 33208453 |
Sequences
>g13902.t3 Gene=g13902 Length=1522
AAAGATTCCAATTAATTTAGCTAGTGTAAAATATAGTGTGCAAGTATCAGCAAGTATGAA
GTGAGCTCTGAGTTTATTGCAGTAAAGAATTGTTTGTATAATTGAATTATAAGCTGTGAA
GAAAGAGAGAAAATAAGCACTCTTTCTTTGTAATCAAATAATAGAAAAATTTACATCTAA
GCTCTAAAACGAGTGAAAAAAATGTGGAACTTGAGTATATACATCGTCACGTGGAATGTT
TCTACGAAATATCCTGATAAGCTGAAACTCAATGATTTGTTAGATATTGATTCACACTTT
AAAGAAAAATGTCTACCCGATATCTATGTCATTGGTCTCCAAGAAGTAAATGCAAACCCG
CAGAATGTTTTATACAATTTATTTCAAGCTGACCCATGGGTACAAAAATTAAAGCAACTG
TTGAAGCCGTTAAGCTATTTCGTTGCCCAGTCAGAACAAATGCAAGGACTGTTAACGGTG
GTGTTCGTTAAACGGAAACATTTGTATCACATAAGAGAAATTGAAAGTGAATATGTTCGT
ACAGGCCTTGGCGGGCAATAAAGGAGCAGTAGCAATTAGAATGAATTGTTATGGATGCTC
AATATGTCTTGTAAATTCGCATTTAGCAGCTCACGATGAAATGATTGAAGAGCGTATTAA
TGACTATCAACGAATTAAAGAAGCGATCAATTTCAGTGTTAAATTTAACAAAAACATTTA
TGATCACGATTATGTCTTTTGGTTTGGTGATCTTAATTTTAGATTGTATGATCCATATAA
TCAAAGTCGAAATCATACACCAGATGAAATACGCGATTTGGTTAAGAAAGATTGCCTCAA
TGAATTAATTAGAATAGATCAATTATCAATGGCAATGTGTGAAGGTCGTGCTTTTTCAGA
ATTAGTTGAGAGATTGCCACAATTCCCACCAACATTCAAATTCGTACAAGATTCCAATGA
TTATGATATGAAACGAAGACCAGCATGGTGTGATAGAATTCTTTACAAAGGTCGAACGAA
AATTCTTAAAAATTGCTCTCTTCATCTCGAACAAATTTCGTACAAGAGCCATCCAAATTA
CAATATTAGCGATCACAAACCAGTATCGTCTGAGTTTAAGATTAATGCACCAGATGATGA
TATTACTGATTTGATAATTAAGTTTAAACCACTATCTGTGTGGAATAACAGCGAACAAAA
TGAAGTTGAATACATCTTGCCACCTAATTATGTTGGTGGAAATGCAGATTGGATTGGTGT
TTATCCTGAAGATTTTACTGGTTTTGATGAATACATTGGTTATGAGTATACCGACACCGC
TGATGAAAAGGCTCAGCCAACTTCCCGCACAATAAAACTCAACTTTTCGGATTCAATAAA
TTTACCTGTCGGTGATGGTAAATTTGTGTTGCTTTACTTCCAATCAACAGGAATGAGAGG
ATATTCAAGTATGGTTGGAATGAGCGAACCATTCCCAGCCATTAAAAGATGCCCATCACC
ACGACCTGATACAATTGATTAA
>g13902.t3 Gene=g13902 Length=313
MNCYGCSICLVNSHLAAHDEMIEERINDYQRIKEAINFSVKFNKNIYDHDYVFWFGDLNF
RLYDPYNQSRNHTPDEIRDLVKKDCLNELIRIDQLSMAMCEGRAFSELVERLPQFPPTFK
FVQDSNDYDMKRRPAWCDRILYKGRTKILKNCSLHLEQISYKSHPNYNISDHKPVSSEFK
INAPDDDITDLIIKFKPLSVWNNSEQNEVEYILPPNYVGGNADWIGVYPEDFTGFDEYIG
YEYTDTADEKAQPTSRTIKLNFSDSINLPVGDGKFVLLYFQSTGMRGYSSMVGMSEPFPA
IKRCPSPRPDTID
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g13902.t3 | Gene3D | G3DSA:3.60.10.10 | - | 1 | 188 | 0e+00 |
| 6 | g13902.t3 | Gene3D | G3DSA:2.60.40.2840 | - | 193 | 306 | 2e-07 |
| 2 | g13902.t3 | PANTHER | PTHR11200 | INOSITOL 5-PHOSPHATASE | 1 | 185 | 0e+00 |
| 1 | g13902.t3 | Pfam | PF17751 | SKICH domain | 193 | 299 | 0e+00 |
| 4 | g13902.t3 | SMART | SM00128 | i5p_5 | 1 | 187 | 0e+00 |
| 3 | g13902.t3 | SUPERFAMILY | SSF56219 | DNase I-like | 4 | 192 | 0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0046856 | phosphatidylinositol dephosphorylation | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
