General information for g13902.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Inositol polyphosphate 5-phosphatase K.
Parent gene
- The parent gene g13902 is located on chr_1: 33207729..33208355 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13902 | g13902.t4 | TSS | g13902.t4 | 33204549 | 33204549 |
| chr_1 | g13902 | g13902.t4 | isoform | g13902.t4 | 33204614 | 33208355 |
| chr_1 | g13902 | g13902.t4 | exon | g13902.t4.exon1 | 33204614 | 33204651 |
| chr_1 | g13902 | g13902.t4 | exon | g13902.t4.exon2 | 33205312 | 33205488 |
| chr_1 | g13902 | g13902.t4 | cds | g13902.t4.CDS1 | 33205475 | 33205488 |
| chr_1 | g13902 | g13902.t4 | exon | g13902.t4.exon3 | 33206186 | 33206531 |
| chr_1 | g13902 | g13902.t4 | cds | g13902.t4.CDS2 | 33206186 | 33206531 |
| chr_1 | g13902 | g13902.t4 | exon | g13902.t4.exon4 | 33206600 | 33207172 |
| chr_1 | g13902 | g13902.t4 | cds | g13902.t4.CDS3 | 33206600 | 33207172 |
| chr_1 | g13902 | g13902.t4 | exon | g13902.t4.exon5 | 33207346 | 33207661 |
| chr_1 | g13902 | g13902.t4 | cds | g13902.t4.CDS4 | 33207346 | 33207661 |
| chr_1 | g13902 | g13902.t4 | exon | g13902.t4.exon6 | 33207729 | 33208355 |
| chr_1 | g13902 | g13902.t4 | cds | g13902.t4.CDS5 | 33207729 | 33208018 |
| chr_1 | g13902 | g13902.t4 | TTS | g13902.t4 | 33208453 | 33208453 |
Sequences
>g13902.t4 Gene=g13902 Length=2077
AAAGATTCCAATTAATTTAGCTAGTGTAAAATATAGTGTGCAAGTATCAGCAAGTATGAA
GTGAGCTCTGAGTTTATTGCAGTAAAGAATTGTTTGTATAATTGAATTATAAGCTGTGAA
GAAAGAGAGAAAATAAGCACTCTTTCTTTGTAATCAAATAATAGAAAAATTTACATCTAA
GCTCTAAAACGAGTGAAAAAAATGTGGAACTTGAGTATATACATCGTCACGTGGAATGTT
TCTACGAAATATCCTGATAAGCTGAAACTCAATGATTTGTTAGATATTGATTCACACTTT
AAAGAAAAATGTCTACCCGATATCTATGTCATTGGTCTCCAAGAAGTAAATGCAAACCCG
CAGAATGTTTTATACAATTTATTTCAAGCTGACCCATGGGTACAAAAATTAAAGCAACTG
TTGAAGCCGTTAAGCTATTTCGTTGCCCAGTCAGAACAAATGCAAGGACTGTTAACGGTG
GTGTTCGTTAAACGGAAACATTTGTATCACATAAGAGAAATTGAAAGTGAATATGTTCGT
ACAGGCCTTGGCGGTATGTGGGGCAATAAAGGAGCAGTAGCAATTAGAATGAATTGTTAT
GGATGCTCAATATGTCTTGTAAATTCGCATTTAGCAGCTCACGATGAAATGATTGAAGAG
CGTATTAATGACTATCAACGAATTAAAGAAGCGATCAATTTCAGTGTTAAATTTAACAAA
AACATTTATGATCACGATTATGTCTTTTGGTTTGGTGATCTTAATTTTAGATTGTATGAT
CCATATAATCAAAGTCGAAATCATACACCAGATGAAATACGCGATTTGGTTAAGAAAGAT
TGCCTCAATGAATTAATTAGAATAGATCAATTATCAATGGCAATGTGTGAAGGTCGTGCT
TTTTCAGAATTAGTTGAGAGATTGCCACAATTCCCACCAACATTCAAATTCGTACAAGAT
TCCAATGATTATGATATGAAACGAAGACCAGCATGGTGTGATAGAATTCTTTACAAAGGT
CGAACGAAAATTCTTAAAAATTGCTCTCTTCATCTCGAACAAATTTCGTACAAGAGCCAT
CCAAATTACAATATTAGCGATCACAAACCAGTATCGTCTGAGTTTAAGATTAATGTCAAA
GAATTATTTCGTAATCATGAATATATTTTAAAACCTCAACGTACTTTATTTTCTAATTAT
TTATCCAATGCTGCTAATATTCCTATAATGGTTGCAACCGCAATTACACAATCAAAACAA
CCTGTTGATTTGGAAACCGATGATGACGATGAATTTTATGATGCACCTGATCACTTTTCT
GATATCGACGATGACGATGAACAGGCACCAGATGATGATATTACTGATTTGATAATTAAG
TTTAAACCACTATCTGTGTGGAATAACAGCGAACAAAATGAAGTTGAATACATCTTGCCA
CCTAATTATGTTGGTGGAAATGCAGATTGGATTGGTGTTTATCCTGAAGATTTTACTGGT
TTTGATGAATACATTGGTTATGAGTATACCGACACCGCTGATGAAAAGGCTCAGCCAACT
TCCCGCACAATAAAACTCAACTTTTCGGATTCAATAAATTTACCTGTCGGTGATGGTAAA
TTTGTGTTGCTTTACTTCCAATCAACAGGAATGAGAGGATATTCAAGTATGGTTGGAATG
AGCGAACCATTCCCAGCCATTAAAAGATGCCCATCACCACGACCTGATACAATTGATTAA
AGAGTTGCCAATTTTATTGAAAATAAAAATGTACTTTAAGTATTAACTGTTCAATTTAAA
GCCTTCAATATATACACGCGTAATATTAGCACAAGTGCTTTAATATAAAATTTACAAACC
ATAATAAGAATTTACTTTTGTGACCATTTTAATGACTTAATAATTAATTTAACAATAATC
AAGATTGTGCAATAATCTATCTTCCATTCCCAATTATTATTTTTATAAAAAGAGCATTAT
TTATTTAGGATGACTTTTTTTTTATTGACCGTGTTTTTTATATTATAAATTTTTGCGTTT
TCCAATAGTTTCAATTTCAATCAATTTTCATGCGTGT
>g13902.t4 Gene=g13902 Length=512
MWNLSIYIVTWNVSTKYPDKLKLNDLLDIDSHFKEKCLPDIYVIGLQEVNANPQNVLYNL
FQADPWVQKLKQLLKPLSYFVAQSEQMQGLLTVVFVKRKHLYHIREIESEYVRTGLGGMW
GNKGAVAIRMNCYGCSICLVNSHLAAHDEMIEERINDYQRIKEAINFSVKFNKNIYDHDY
VFWFGDLNFRLYDPYNQSRNHTPDEIRDLVKKDCLNELIRIDQLSMAMCEGRAFSELVER
LPQFPPTFKFVQDSNDYDMKRRPAWCDRILYKGRTKILKNCSLHLEQISYKSHPNYNISD
HKPVSSEFKINVKELFRNHEYILKPQRTLFSNYLSNAANIPIMVATAITQSKQPVDLETD
DDDEFYDAPDHFSDIDDDDEQAPDDDITDLIIKFKPLSVWNNSEQNEVEYILPPNYVGGN
ADWIGVYPEDFTGFDEYIGYEYTDTADEKAQPTSRTIKLNFSDSINLPVGDGKFVLLYFQ
STGMRGYSSMVGMSEPFPAIKRCPSPRPDTID
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g13902.t4 | Gene3D | G3DSA:3.60.10.10 | - | 1 | 334 | 0e+00 |
| 7 | g13902.t4 | Gene3D | G3DSA:2.60.40.2840 | - | 392 | 505 | 6e-07 |
| 3 | g13902.t4 | PANTHER | PTHR11200 | INOSITOL 5-PHOSPHATASE | 3 | 384 | 0e+00 |
| 2 | g13902.t4 | Pfam | PF03372 | Endonuclease/Exonuclease/phosphatase family | 9 | 301 | 0e+00 |
| 1 | g13902.t4 | Pfam | PF17751 | SKICH domain | 392 | 498 | 0e+00 |
| 5 | g13902.t4 | SMART | SM00128 | i5p_5 | 2 | 316 | 0e+00 |
| 4 | g13902.t4 | SUPERFAMILY | SSF56219 | DNase I-like | 3 | 313 | 0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0046856 | phosphatidylinositol dephosphorylation | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
