General information for g13902.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A.
Parent gene
- The parent gene g13902 is located on chr_1: 33207729..33208355 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g13902 | g13902.t6 | TSS | g13902.t6 | 33204549 | 33204549 |
| chr_1 | g13902 | g13902.t6 | isoform | g13902.t6 | 33204646 | 33208018 |
| chr_1 | g13902 | g13902.t6 | exon | g13902.t6.exon1 | 33204646 | 33204648 |
| chr_1 | g13902 | g13902.t6 | exon | g13902.t6.exon2 | 33205312 | 33205488 |
| chr_1 | g13902 | g13902.t6 | cds | g13902.t6.CDS1 | 33205475 | 33205488 |
| chr_1 | g13902 | g13902.t6 | exon | g13902.t6.exon3 | 33206186 | 33206531 |
| chr_1 | g13902 | g13902.t6 | cds | g13902.t6.CDS2 | 33206186 | 33206531 |
| chr_1 | g13902 | g13902.t6 | exon | g13902.t6.exon4 | 33206600 | 33207172 |
| chr_1 | g13902 | g13902.t6 | cds | g13902.t6.CDS3 | 33206600 | 33207172 |
| chr_1 | g13902 | g13902.t6 | exon | g13902.t6.exon5 | 33207556 | 33207661 |
| chr_1 | g13902 | g13902.t6 | cds | g13902.t6.CDS4 | 33207556 | 33207661 |
| chr_1 | g13902 | g13902.t6 | exon | g13902.t6.exon6 | 33207729 | 33208018 |
| chr_1 | g13902 | g13902.t6 | cds | g13902.t6.CDS5 | 33207729 | 33208018 |
| chr_1 | g13902 | g13902.t6 | TTS | g13902.t6 | 33208453 | 33208453 |
Sequences
>g13902.t6 Gene=g13902 Length=1495
ATATGCAAGTATCAGCAAGTATGAAGTGAGCTCTGAGTTTATTGCAGTAAAGAATTGTTT
GTATAATTGAATTATAAGCTGTGAAGAAAGAGAGAAAATAAGCACTCTTTCTTTGTAATC
AAATAATAGAAAAATTTACATCTAAGCTCTAAAACGAGTGAAAAAAATGTGGAACTTGAG
TATATACATCGTCACGTGGAATGTTTCTACGAAATATCCTGATAAGCTGAAACTCAATGA
TTTGTTAGATATTGATTCACACTTTAAAGAAAAATGTCTACCCGATATCTATGTCATTGG
TCTCCAAGAAGTAAATGCAAACCCGCAGAATGTTTTATACAATTTATTTCAAGCTGACCC
ATGGGTACAAAAATTAAAGCAACTGTTGAAGCCGTTAAGCTATTTCGTTGCCCAGTCAGA
ACAAATGCAAGGACTGTTAACGGTGGTGTTCGTTAAACGGAAACATTTGTATCACATAAG
AGAAATTGAAAGTGAATATGTTCGTACAGGCCTTGGCGGTATGTGGGGCAATAAAGGAGC
AGTAGCAATTAGAATGAATTGTTATGGATGCTCAATATGTCTTGTAAATTCGCATTTAGC
AGCTCACGATGAAATGATTGAAGAGCGTATTAATGACTATCAACGAATTAAAGAAGCGAT
CAATTTCAGTGTTAAATTTAACAAAAACATTTATGATCACGATTATGTCTTTTGGTTTGG
TGATCTTAATTTTAGATTGTATGATCCATATAATCAAAGTCGAAATCATACACCAGATGA
AATACGCGATTTGGTTAAGAAAGATTGCCTCAATGAATTAATTAGAATAGATCAATTATC
AATGGCAATGTGTGAAGGTCGTGCTTTTTCAGAATTAGTTGAGAGATTGCCACAATTCCC
ACCAACATTCAAATTCGTACAAGATTCCAATGATTATGATATGAAACGAAGACCAGCATG
GTGTGATAGAATTCTTTACAAAGGTCGAACGAAAATTCTTAAAAATTGCTCTCTTCATCT
CGAACAAATTTCGTACAAGAGCCATCCAAATTACAATATTAGCGATCACAAACCAGTATC
GTCTGAGTTTAAGATTAATGCACCAGATGATGATATTACTGATTTGATAATTAAGTTTAA
ACCACTATCTGTGTGGAATAACAGCGAACAAAATGAAGTTGAATACATCTTGCCACCTAA
TTATGTTGGTGGAAATGCAGATTGGATTGGTGTTTATCCTGAAGATTTTACTGGTTTTGA
TGAATACATTGGTTATGAGTATACCGACACCGCTGATGAAAAGGCTCAGCCAACTTCCCG
CACAATAAAACTCAACTTTTCGGATTCAATAAATTTACCTGTCGGTGATGGTAAATTTGT
GTTGCTTTACTTCCAATCAACAGGAATGAGAGGATATTCAAGTATGGTTGGAATGAGCGA
ACCATTCCCAGCCATTAAAAGATGCCCATCACCACGACCTGATACAATTGATTAA
>g13902.t6 Gene=g13902 Length=442
MWNLSIYIVTWNVSTKYPDKLKLNDLLDIDSHFKEKCLPDIYVIGLQEVNANPQNVLYNL
FQADPWVQKLKQLLKPLSYFVAQSEQMQGLLTVVFVKRKHLYHIREIESEYVRTGLGGMW
GNKGAVAIRMNCYGCSICLVNSHLAAHDEMIEERINDYQRIKEAINFSVKFNKNIYDHDY
VFWFGDLNFRLYDPYNQSRNHTPDEIRDLVKKDCLNELIRIDQLSMAMCEGRAFSELVER
LPQFPPTFKFVQDSNDYDMKRRPAWCDRILYKGRTKILKNCSLHLEQISYKSHPNYNISD
HKPVSSEFKINAPDDDITDLIIKFKPLSVWNNSEQNEVEYILPPNYVGGNADWIGVYPED
FTGFDEYIGYEYTDTADEKAQPTSRTIKLNFSDSINLPVGDGKFVLLYFQSTGMRGYSSM
VGMSEPFPAIKRCPSPRPDTID
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g13902.t6 | Gene3D | G3DSA:3.60.10.10 | - | 1 | 326 | 0e+00 |
| 7 | g13902.t6 | Gene3D | G3DSA:2.60.40.2840 | - | 327 | 435 | 4e-07 |
| 3 | g13902.t6 | PANTHER | PTHR11200 | INOSITOL 5-PHOSPHATASE | 3 | 314 | 0e+00 |
| 2 | g13902.t6 | Pfam | PF03372 | Endonuclease/Exonuclease/phosphatase family | 9 | 301 | 0e+00 |
| 1 | g13902.t6 | Pfam | PF17751 | SKICH domain | 322 | 428 | 0e+00 |
| 5 | g13902.t6 | SMART | SM00128 | i5p_5 | 2 | 316 | 0e+00 |
| 4 | g13902.t6 | SUPERFAMILY | SSF56219 | DNase I-like | 3 | 319 | 0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0046856 | phosphatidylinositol dephosphorylation | BP |
KEGG
Orthology
- This transcript has been annotated with K24222 (inositol polyphosphate 5-phosphatase INPP5J/K)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
