Gene loci information

Transcript annotation

  • This transcript has been annotated as Serine protease snake.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13907 g13907.t15 TSS g13907.t15 33254844 33254844
chr_1 g13907 g13907.t15 isoform g13907.t15 33254871 33257071
chr_1 g13907 g13907.t15 exon g13907.t15.exon1 33254871 33254940
chr_1 g13907 g13907.t15 exon g13907.t15.exon2 33255198 33255374
chr_1 g13907 g13907.t15 exon g13907.t15.exon3 33255851 33255967
chr_1 g13907 g13907.t15 exon g13907.t15.exon4 33256084 33256388
chr_1 g13907 g13907.t15 cds g13907.t15.CDS1 33256114 33256388
chr_1 g13907 g13907.t15 exon g13907.t15.exon5 33256450 33256709
chr_1 g13907 g13907.t15 cds g13907.t15.CDS2 33256450 33256709
chr_1 g13907 g13907.t15 exon g13907.t15.exon6 33256839 33256965
chr_1 g13907 g13907.t15 cds g13907.t15.CDS3 33256839 33256965
chr_1 g13907 g13907.t15 exon g13907.t15.exon7 33257026 33257071
chr_1 g13907 g13907.t15 cds g13907.t15.CDS4 33257026 33257071
chr_1 g13907 g13907.t15 TTS g13907.t15 33257197 33257197

Sequences

>g13907.t15 Gene=g13907 Length=1102
ATGATCATTAGAAATCGAGTTTGTATTTTACTTCAAATTCTCTGCTGTGCATTTGTAAAT
TCTCAACTCGTGGGAGAAGAGTGTATCAGAGATTACGACAATGCACGAGGTATTTGTGTT
TCGCATAGAGAATGCAAAAGAGCGAGAGAAGAACATGCATTGGGAATTCCGTTGACTTAT
TGTTCGTTTTTGGATGGCGTGACGAACATTTGTTGTCCGCAATTTGAAAAAAGAAAAAGT
GCATCAAAATGTGAAGAATATGGGGATCTAACAAAGAAGAAAGATTGTGTGTGGACGAGT
TTAATTCAGAATCATGAACCGCAATGTTTTGAAACTTTCACATGCAATCCAAGCACACCA
CTGAAGTTAAAATAATTTAGGTGAATTTCCTCATATGGTTGCAATTGGATGGCAAAAATT
GAATACAATTTCATTTGATTGTGGTGGAAGTTTGATTTCTGAACGTTATGTTCTAACAGC
AGCGCATTGTGAAAAATCTGACAATATAAGGCCATCATTTGTAAGACTTGGCGATCAAAA
TGTGAAAACACGTGATGATGGAATGATAGAAATTGACATTGCTATAGAAGATTTTATTGT
TCACCAAGATTATTCATCAATAACTCATAAAAATGATATTGCCCTCATTAGAATGGCACA
AGAAGTAAAATTCTCAGAATCCATTAGACCCGCTTGTTTGTGGCAGACAAGCAGTGTCAA
TTTCACGAAGTTGATCGCTTGTGGCTGGGGTGCTCTTGAGTATGCTTCTCAGACGAGTGA
TGAGTTGAGAAAAGTTGAACTTGACGTTGTCAATAATACTTTATGTAATCAACTGTTAAG
GGAATCATTGGCTCTTTCTAATAATAAATTGATTGGTGACTCACAGTTATGTGCTGGATT
ACTTAAGGGCGGTAAAGATACGTGTCAAGAATTTTCTTCAGGACCACTTCATGTTTCAAT
TCGTGATGGAAATCCTTGCCAATTTCATATAGTTGGTATAACAAGTTATGGATCAATTCT
CTGTGGAACTCCAAATACTCCTGCTGTTTATACTAGAGTTTCTGCTTATTTGGATTGGAT
TGAAAGCATCGTATGGCGATAG

>g13907.t15 Gene=g13907 Length=235
MVAIGWQKLNTISFDCGGSLISERYVLTAAHCEKSDNIRPSFVRLGDQNVKTRDDGMIEI
DIAIEDFIVHQDYSSITHKNDIALIRMAQEVKFSESIRPACLWQTSSVNFTKLIACGWGA
LEYASQTSDELRKVELDVVNNTLCNQLLRESLALSNNKLIGDSQLCAGLLKGGKDTCQEF
SSGPLHVSIRDGNPCQFHIVGITSYGSILCGTPNTPAVYTRVSAYLDWIESIVWR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g13907.t15 CDD cd00190 Tryp_SPc 1 232 7.96871E-74
8 g13907.t15 Gene3D G3DSA:2.40.10.10 - 1 230 6.6E-64
9 g13907.t15 Gene3D G3DSA:2.40.10.10 - 100 222 6.6E-64
2 g13907.t15 PANTHER PTHR24260 - 1 234 1.7E-66
3 g13907.t15 PANTHER PTHR24260:SF91 FI18411P1-RELATED 1 234 1.7E-66
4 g13907.t15 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 17 32 3.3E-12
6 g13907.t15 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 77 91 3.3E-12
5 g13907.t15 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 174 186 3.3E-12
1 g13907.t15 Pfam PF00089 Trypsin 13 229 3.4E-46
11 g13907.t15 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 27 32 -
13 g13907.t15 ProSiteProfiles PS50240 Serine proteases, trypsin domain profile. 1 234 27.045
12 g13907.t15 SMART SM00020 trypsin_2 1 229 8.5E-57
7 g13907.t15 SUPERFAMILY SSF50494 Trypsin-like serine proteases 1 234 5.89E-68

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

## Warning: Removed 1 row(s) containing missing values (geom_path).

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004252 serine-type endopeptidase activity MF
GO:0006508 proteolysis BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed