Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Serine protease snake.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13907 g13907.t19 isoform g13907.t19 33255895 33257071
chr_1 g13907 g13907.t19 exon g13907.t19.exon1 33255895 33255967
chr_1 g13907 g13907.t19 cds g13907.t19.CDS1 33255945 33255967
chr_1 g13907 g13907.t19 exon g13907.t19.exon2 33256155 33256388
chr_1 g13907 g13907.t19 cds g13907.t19.CDS2 33256155 33256388
chr_1 g13907 g13907.t19 exon g13907.t19.exon3 33256450 33256709
chr_1 g13907 g13907.t19 cds g13907.t19.CDS3 33256450 33256709
chr_1 g13907 g13907.t19 exon g13907.t19.exon4 33256843 33256965
chr_1 g13907 g13907.t19 cds g13907.t19.CDS4 33256843 33256901
chr_1 g13907 g13907.t19 exon g13907.t19.exon5 33257026 33257071
chr_1 g13907 g13907.t19 TTS g13907.t19 33257197 33257197
chr_1 g13907 g13907.t19 TSS g13907.t19 NA NA

Sequences

>g13907.t19 Gene=g13907 Length=736
TGGACGAGTTTAATTCAGAATCATGAACCGCAATGTTTTGAAACTTTCACATGCAATCCA
AGCACACCACTGATGATTGTGGTGGAAGTTTGATTTCTGAACGTTATGTTCTAACAGCAG
CGCATTGTGAAAAATCTGACAATATAAGGCCATCATTTGTAAGACTTGGCGATCAAAATG
TGAAAACACGTGATGATGGAATGATAGAAATTGACATTGCTATAGAAGATTTTATTGTTC
ACCAAGATTATTCATCAATAACTCATAAAAATGATATTGCCCTCATTAGAATGGCACAAG
AAGTAAAATTCTCAGAATCCATTAGACCCGCTTGTTTGTGGCAGACAAGCAGTGTCAATT
TCACGAAGTTGATCGCTTGTGGCTGGGGTGCTCTTGAGTATGCTTCTCAGACGAGTGATG
AGTTGAGAAAAGTTGAACTTGACGTTGTCAATAATACTTTATGTAATCAACTGTTAAGGG
AATCATTGGCTCTTTCTAATAATAAATTGATTGGTGACTCACAGTTATGTGCTGGATTAC
TTAAGGGCGGTAAAGATACGTGTCAAGTTCTTCAGGACCACTTCATGTTTCAATTCGTGA
TGGAAATCCTTGCCAATTTCATATAGTTGGTATAACAAGTTATGGATCAATTCTCTGTGG
AACTCCAAATACTCCTGCTGTTTATACTAGAGTTTCTGCTTATTTGGATTGGATTGAAAG
CATCGTATGGCGATAG

>g13907.t19 Gene=g13907 Length=191
MQSKHTTDDCGGSLISERYVLTAAHCEKSDNIRPSFVRLGDQNVKTRDDGMIEIDIAIED
FIVHQDYSSITHKNDIALIRMAQEVKFSESIRPACLWQTSSVNFTKLIACGWGALEYASQ
TSDELRKVELDVVNNTLCNQLLRESLALSNNKLIGDSQLCAGLLKGGKDTCQVLQDHFMF
QFVMEILANFI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g13907.t19 CDD cd00190 Tryp_SPc 10 183 1.2282E-55
8 g13907.t19 Gene3D G3DSA:2.40.10.10 - 7 93 1.3E-44
7 g13907.t19 Gene3D G3DSA:2.40.10.10 - 94 172 1.3E-44
2 g13907.t19 PANTHER PTHR24260 - 4 172 5.1E-44
3 g13907.t19 PANTHER PTHR24260:SF91 FI18411P1-RELATED 4 172 5.1E-44
4 g13907.t19 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 11 26 1.4E-8
5 g13907.t19 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 71 85 1.4E-8
1 g13907.t19 Pfam PF00089 Trypsin 4 172 9.8E-35
10 g13907.t19 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 21 26 -
12 g13907.t19 ProSiteProfiles PS50240 Serine proteases, trypsin domain profile. 1 172 18.431
11 g13907.t19 SMART SM00020 trypsin_2 5 191 2.5E-22
6 g13907.t19 SUPERFAMILY SSF50494 Trypsin-like serine proteases 9 172 1.77E-46

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004252 serine-type endopeptidase activity MF
GO:0006508 proteolysis BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed