Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Serine protease snake.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13907 g13907.t6 TSS g13907.t6 33254844 33254844
chr_1 g13907 g13907.t6 isoform g13907.t6 33254871 33257071
chr_1 g13907 g13907.t6 exon g13907.t6.exon1 33254871 33254940
chr_1 g13907 g13907.t6 exon g13907.t6.exon2 33255198 33255374
chr_1 g13907 g13907.t6 exon g13907.t6.exon3 33255851 33255967
chr_1 g13907 g13907.t6 exon g13907.t6.exon4 33256023 33256388
chr_1 g13907 g13907.t6 cds g13907.t6.CDS1 33256114 33256388
chr_1 g13907 g13907.t6 exon g13907.t6.exon5 33256450 33256709
chr_1 g13907 g13907.t6 cds g13907.t6.CDS2 33256450 33256709
chr_1 g13907 g13907.t6 exon g13907.t6.exon6 33256851 33256965
chr_1 g13907 g13907.t6 cds g13907.t6.CDS3 33256851 33256965
chr_1 g13907 g13907.t6 exon g13907.t6.exon7 33257026 33257071
chr_1 g13907 g13907.t6 cds g13907.t6.CDS4 33257026 33257071
chr_1 g13907 g13907.t6 TTS g13907.t6 33257197 33257197

Sequences

>g13907.t6 Gene=g13907 Length=1151
ATGATCATTAGAAATCGAGTTTGTATTTTACTTCAAATTCTCTGCTGTGCATTTGTAAAT
TCTCAACTCGTGGGAGAAGAGTGTATCAGAGATTACGACAATGCACGAGGTATTTGTGTT
TCGCATAGAGAATGCAAAAGAGCGAGAGAAGAACATGCATTGGGAATTCCGTTGACTTAT
TGTTCGTTTTTGGATGGCGTGACGAACATTTGTTGTCCGCAATTTGAAAAAAGAAAAAGT
GCATCAAAATGTGAAGAATATGGGGATCTAACAAAGAAGAAAGATTGTGTGTGGACGAGT
TTAATTCAGAATCATGAACCGCAATGTTTTGAAACTTTCACATGCAATCCAAGCACACCA
CTGATTTATGGTGGTGATATTGCAAAAGGAGGTAAATTAAATTTAATTTTATTGAAAATT
GTTAGAGTTAAAATAATTTAGGTGAATTTCCTCATATGGTTGCAATTGGATGGCAAAAAT
TGAATACAATTTCATTTGATTGTGGTGGAAGTTTGATTTCTGAACGTTATGTTCTAACAG
CAGCGCATTGTGAAAAATCTGACAATATAAGGCCATCATTTGTAAGACTTGGCGATCAAA
ATGTGAAAACACGTGATGATGGAATGATAGAAATTGACATTGCTATAGAAGATTTTATTG
TTCACCAAGATTATTCATCAATAACTCATAAAAATGATATTGCCCTCATTAGAATGGCAC
AAGAAGTAAAATTCTCAGAATCCATTAGACCCGCTTGTTTGTGGCAGACAAGCAGTGTCA
ATTTCACGAAGTTGATCGCTTGTGGCTGGGGTGCTCTTGAGTATGCTTCTCAGACGAGTG
ATGAGTTGAGAAAAGTTGAACTTGACGTTGTCAATAATACTTTATGTAATCAACTGTTAA
GGGAATCATTGGCTCTTTCTAATAATAAATTGATTGGTGACTCACAGTTATGTGCTGGAT
TACTTAAGGGCGGTAAAGATACGTGTCAAGGACCACTTCATGTTTCAATTCGTGATGGAA
ATCCTTGCCAATTTCATATAGTTGGTATAACAAGTTATGGATCAATTCTCTGTGGAACTC
CAAATACTCCTGCTGTTTATACTAGAGTTTCTGCTTATTTGGATTGGATTGAAAGCATCG
TATGGCGATAG

>g13907.t6 Gene=g13907 Length=231
MVAIGWQKLNTISFDCGGSLISERYVLTAAHCEKSDNIRPSFVRLGDQNVKTRDDGMIEI
DIAIEDFIVHQDYSSITHKNDIALIRMAQEVKFSESIRPACLWQTSSVNFTKLIACGWGA
LEYASQTSDELRKVELDVVNNTLCNQLLRESLALSNNKLIGDSQLCAGLLKGGKDTCQGP
LHVSIRDGNPCQFHIVGITSYGSILCGTPNTPAVYTRVSAYLDWIESIVWR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g13907.t6 CDD cd00190 Tryp_SPc 1 228 3.13581E-73
8 g13907.t6 Gene3D G3DSA:2.40.10.10 - 1 226 2.0E-60
7 g13907.t6 Gene3D G3DSA:2.40.10.10 - 100 218 2.0E-60
2 g13907.t6 PANTHER PTHR24260 - 1 230 2.2E-63
3 g13907.t6 PANTHER PTHR24260:SF91 FI18411P1-RELATED 1 230 2.2E-63
4 g13907.t6 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 17 32 1.8E-8
5 g13907.t6 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 77 91 1.8E-8
1 g13907.t6 Pfam PF00089 Trypsin 13 225 6.2E-45
10 g13907.t6 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 27 32 -
12 g13907.t6 ProSiteProfiles PS50240 Serine proteases, trypsin domain profile. 1 230 25.523
11 g13907.t6 SMART SM00020 trypsin_2 1 225 4.6E-58
6 g13907.t6 SUPERFAMILY SSF50494 Trypsin-like serine proteases 1 230 7.95E-66

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

## Warning: Removed 1 row(s) containing missing values (geom_path).

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004252 serine-type endopeptidase activity MF
GO:0006508 proteolysis BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed