Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Serine protease snake.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13907 g13907.t9 TSS g13907.t9 33254844 33254844
chr_1 g13907 g13907.t9 isoform g13907.t9 33254871 33257071
chr_1 g13907 g13907.t9 exon g13907.t9.exon1 33254871 33254940
chr_1 g13907 g13907.t9 exon g13907.t9.exon2 33255198 33255374
chr_1 g13907 g13907.t9 exon g13907.t9.exon3 33255851 33255967
chr_1 g13907 g13907.t9 exon g13907.t9.exon4 33256023 33256388
chr_1 g13907 g13907.t9 cds g13907.t9.CDS1 33256114 33256388
chr_1 g13907 g13907.t9 exon g13907.t9.exon5 33256450 33256709
chr_1 g13907 g13907.t9 cds g13907.t9.CDS2 33256450 33256709
chr_1 g13907 g13907.t9 exon g13907.t9.exon6 33256842 33256965
chr_1 g13907 g13907.t9 cds g13907.t9.CDS3 33256842 33256965
chr_1 g13907 g13907.t9 exon g13907.t9.exon7 33257026 33257071
chr_1 g13907 g13907.t9 cds g13907.t9.CDS4 33257026 33257071
chr_1 g13907 g13907.t9 TTS g13907.t9 33257197 33257197

Sequences

>g13907.t9 Gene=g13907 Length=1160
ATGATCATTAGAAATCGAGTTTGTATTTTACTTCAAATTCTCTGCTGTGCATTTGTAAAT
TCTCAACTCGTGGGAGAAGAGTGTATCAGAGATTACGACAATGCACGAGGTATTTGTGTT
TCGCATAGAGAATGCAAAAGAGCGAGAGAAGAACATGCATTGGGAATTCCGTTGACTTAT
TGTTCGTTTTTGGATGGCGTGACGAACATTTGTTGTCCGCAATTTGAAAAAAGAAAAAGT
GCATCAAAATGTGAAGAATATGGGGATCTAACAAAGAAGAAAGATTGTGTGTGGACGAGT
TTAATTCAGAATCATGAACCGCAATGTTTTGAAACTTTCACATGCAATCCAAGCACACCA
CTGATTTATGGTGGTGATATTGCAAAAGGAGGTAAATTAAATTTAATTTTATTGAAAATT
GTTAGAGTTAAAATAATTTAGGTGAATTTCCTCATATGGTTGCAATTGGATGGCAAAAAT
TGAATACAATTTCATTTGATTGTGGTGGAAGTTTGATTTCTGAACGTTATGTTCTAACAG
CAGCGCATTGTGAAAAATCTGACAATATAAGGCCATCATTTGTAAGACTTGGCGATCAAA
ATGTGAAAACACGTGATGATGGAATGATAGAAATTGACATTGCTATAGAAGATTTTATTG
TTCACCAAGATTATTCATCAATAACTCATAAAAATGATATTGCCCTCATTAGAATGGCAC
AAGAAGTAAAATTCTCAGAATCCATTAGACCCGCTTGTTTGTGGCAGACAAGCAGTGTCA
ATTTCACGAAGTTGATCGCTTGTGGCTGGGGTGCTCTTGAGTATGCTTCTCAGACGAGTG
ATGAGTTGAGAAAAGTTGAACTTGACGTTGTCAATAATACTTTATGTAATCAACTGTTAA
GGGAATCATTGGCTCTTTCTAATAATAAATTGATTGGTGACTCACAGTTATGTGCTGGAT
TACTTAAGGGCGGTAAAGATACGTGTCAAGTTTCTTCAGGACCACTTCATGTTTCAATTC
GTGATGGAAATCCTTGCCAATTTCATATAGTTGGTATAACAAGTTATGGATCAATTCTCT
GTGGAACTCCAAATACTCCTGCTGTTTATACTAGAGTTTCTGCTTATTTGGATTGGATTG
AAAGCATCGTATGGCGATAG

>g13907.t9 Gene=g13907 Length=234
MVAIGWQKLNTISFDCGGSLISERYVLTAAHCEKSDNIRPSFVRLGDQNVKTRDDGMIEI
DIAIEDFIVHQDYSSITHKNDIALIRMAQEVKFSESIRPACLWQTSSVNFTKLIACGWGA
LEYASQTSDELRKVELDVVNNTLCNQLLRESLALSNNKLIGDSQLCAGLLKGGKDTCQVS
SGPLHVSIRDGNPCQFHIVGITSYGSILCGTPNTPAVYTRVSAYLDWIESIVWR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g13907.t9 CDD cd00190 Tryp_SPc 1 231 8.45388E-73
8 g13907.t9 Gene3D G3DSA:2.40.10.10 - 1 229 3.0E-62
9 g13907.t9 Gene3D G3DSA:2.40.10.10 - 100 221 3.0E-62
2 g13907.t9 PANTHER PTHR24260 - 1 233 2.8E-65
3 g13907.t9 PANTHER PTHR24260:SF91 FI18411P1-RELATED 1 233 2.8E-65
4 g13907.t9 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 17 32 1.9E-10
6 g13907.t9 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 77 91 1.9E-10
5 g13907.t9 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 174 186 1.9E-10
1 g13907.t9 Pfam PF00089 Trypsin 13 228 6.2E-46
11 g13907.t9 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 27 32 -
13 g13907.t9 ProSiteProfiles PS50240 Serine proteases, trypsin domain profile. 1 233 26.175
12 g13907.t9 SMART SM00020 trypsin_2 1 228 1.9E-55
7 g13907.t9 SUPERFAMILY SSF50494 Trypsin-like serine proteases 1 233 1.12E-66

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

## Warning: Removed 1 row(s) containing missing values (geom_path).

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004252 serine-type endopeptidase activity MF
GO:0006508 proteolysis BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed