Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Major facilitator superfamily domain-containing protein 8.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13914 g13914.t4 isoform g13914.t4 33373157 33375461
chr_1 g13914 g13914.t4 TSS g13914.t4 33373157 33373157
chr_1 g13914 g13914.t4 exon g13914.t4.exon1 33373157 33373308
chr_1 g13914 g13914.t4 exon g13914.t4.exon2 33373643 33373905
chr_1 g13914 g13914.t4 exon g13914.t4.exon3 33373986 33374238
chr_1 g13914 g13914.t4 exon g13914.t4.exon4 33374351 33375461
chr_1 g13914 g13914.t4 cds g13914.t4.CDS1 33374490 33375461
chr_1 g13914 g13914.t4 TTS g13914.t4 NA NA

Sequences

>g13914.t4 Gene=g13914 Length=1779
CAGTTTGCGAGGCACTTTTGTGTGAGGCAGAAGTACATTTTTTTCTCTCTTTACAAAATC
ACAATCATGAACTTTTTGATTTGTAAAAAGTAAAAATATTGTGTCGTTCACAATCGTGTA
ATTTTTTTTCTCAATACATTAAAATCCAACAGATTGTGCAAAATCATTTGCAAATTTGAG
TGAAAAAGAGAGAGAGAGAGAGAAGGAAACTTTATGCAATAATAATATGGAGAATAATGA
GCTGAAATCATCAGACTCTGCAGATGCAGAAGCAATAAATCGAGATCAAATACTTGAAAC
ACCATCGGAGCGTAGAATTCGCATCTTTTCTCTCAATATAATTTATTTTACAATGTTTTT
AATGACACTTGGTTTTTCAATAATATTAACTGCCATTTGGCCATATATTGATAAGTTAGA
TAGAGACGCTGGTAAAGTATTTATGGGTTGGATTGTTGCTGCTAATCCTCTAGGACAATT
TATTTTCTCTCCCGTATTTGGATGGTGGGCAAATAAATCAAAATCGATAAGAACGCCATT
TATCGTATCTATGATTATTTTTTGCGTCGCAAGTGCAGTCTATTCATGTCTGGACATTGT
TGAAAATAATGTAAAATATTGGATGCTTGTTTGTAGATTTTTTGTTGGCGTCTCATCGGC
AAACATTGAAGCTATGTGTCAGCTGCTACTAAACTTAAGGAAAGAACAAAGGCTGTGTCT
TTATTAACACTTGCCCAAACACTTGGATTTATATTTGGTCCACTTTTTCAAGCGGCATTT
ACTTCATTAGGAAGTGAAGGATATAAAATGTACTTTAATTTACCACTATCGATGTATACA
GCACCAGGATGGCTCAATGTTTTCCTTGGCTTATTCAATTTGATACTATTTCATCCTAAA
ATTTTCCAAGACAAAAGAGTCGCTGCACGTGAACAGATGTTAATTCAGGGAAAAGCTTCA
GAAAAAGAAGCATGGAAAAATATTAAGCCTGATTACTTTGTTTCATGGGCACTCATATTT
TCATTATTTGTATTTGTTTTTAATTTCGTATTGCTCGAAAGTATGGGAACAGCTTTAACA
ATGGAACAATTTGCATGGACAAAGAAACAAGCAATTGAATATATGGCGTATATTATGGGT
ATTGGCGGTTTGATAGCATGTGGTACATTTGTAGCAATATCACCGCTCTGTAAGAAATTT
AGAGAAAATGATGTGCTGATATATGGTGGCTTTTTTGTTATGATATTATCGCGTATAACT
CATATTCCCTACGGAAGTACAATACCAAAATTAGCTTTACCCAAAGAATACACATTCGAA
AATGGCACACATGTGATATTTGAAGAAGATGATCCTCACATTCTCGGTTGTCCGGCATAT
GAGCAAAAGTGGTGTGAAACAACTCCAGCATTAGGATTCTATGAATTTATTTTAGGATAC
ATTCTCACAAGTTTTGGCTATCCTATTGGCCTAACATTAATTCAAACAATTTTCTCAAAA
GTTCTTGGACCACGACCGCAAGGTGTTTGGATGAGTTTGATGACAAATGCCGGTTGTCTA
TCAAGAATTTTTGGACCAATTTGTGTATCAATGCTTTATGCTCGCTTTGGCACAAGAATT
ACAATGTTATTTACTCTAATAATTATGATAATTCCAATGGTTTGGCTTCTTTTCTTAAAA
GACCGCATGCTGATTGAAGATTTTAAAGATAAAACAATTGAAATGGAAGAAAGAAATGGA
TTAAAACCAAATATACAAATTAATGATAACGATAGATGA

>g13914.t4 Gene=g13914 Length=323
MYFNLPLSMYTAPGWLNVFLGLFNLILFHPKIFQDKRVAAREQMLIQGKASEKEAWKNIK
PDYFVSWALIFSLFVFVFNFVLLESMGTALTMEQFAWTKKQAIEYMAYIMGIGGLIACGT
FVAISPLCKKFRENDVLIYGGFFVMILSRITHIPYGSTIPKLALPKEYTFENGTHVIFEE
DDPHILGCPAYEQKWCETTPALGFYEFILGYILTSFGYPIGLTLIQTIFSKVLGPRPQGV
WMSLMTNAGCLSRIFGPICVSMLYARFGTRITMLFTLIIMIIPMVWLLFLKDRMLIEDFK
DKTIEMEERNGLKPNIQINDNDR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g13914.t4 PANTHER PTHR23510:SF3 MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 8 5 294 6.5E-74
3 g13914.t4 PANTHER PTHR23510 INNER MEMBRANE TRANSPORT PROTEIN YAJR 5 294 6.5E-74
1 g13914.t4 Pfam PF07690 Major Facilitator Superfamily 204 290 9.8E-9
17 g13914.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 11 -
26 g13914.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 12 28 -
13 g13914.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 29 62 -
22 g13914.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 63 82 -
19 g13914.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 83 101 -
23 g13914.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 102 124 -
12 g13914.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 125 135 -
25 g13914.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 136 155 -
16 g13914.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 156 207 -
21 g13914.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 208 229 -
15 g13914.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 230 240 -
20 g13914.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 241 265 -
18 g13914.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 266 270 -
24 g13914.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 271 290 -
14 g13914.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 291 323 -
11 g13914.t4 SUPERFAMILY SSF103473 MFS general substrate transporter 12 294 3.01E-16
10 g13914.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 5 27 -
6 g13914.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 63 82 -
7 g13914.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 102 124 -
5 g13914.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 136 153 -
9 g13914.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 207 229 -
4 g13914.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 250 267 -
8 g13914.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 271 290 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0055085 transmembrane transport BP
GO:0022857 transmembrane transporter activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values