Gene loci information

Transcript annotation

  • This transcript has been annotated as Endonuclease G, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13917 g13917.t2 TSS g13917.t2 33395561 33395561
chr_1 g13917 g13917.t2 isoform g13917.t2 33395622 33396746
chr_1 g13917 g13917.t2 exon g13917.t2.exon1 33395622 33395729
chr_1 g13917 g13917.t2 exon g13917.t2.exon2 33395795 33396105
chr_1 g13917 g13917.t2 cds g13917.t2.CDS1 33395926 33396105
chr_1 g13917 g13917.t2 exon g13917.t2.exon3 33396169 33396347
chr_1 g13917 g13917.t2 cds g13917.t2.CDS2 33396169 33396347
chr_1 g13917 g13917.t2 exon g13917.t2.exon4 33396410 33396746
chr_1 g13917 g13917.t2 cds g13917.t2.CDS3 33396410 33396746
chr_1 g13917 g13917.t2 TTS g13917.t2 33396795 33396795

Sequences

>g13917.t2 Gene=g13917 Length=935
ATGAGACTACACGCAGTAAACACAGTGAAAAAATTAGTGTTAATATCAGGAATTAGTGGA
CTTTCATATTACGCTGGACGTCAATCAATAGAAAATAAATTAGAATCTAGACTAAAAATT
TATTAAGTAAACCAGCACTGCCTATATTCAGCACAGTATCAGCTGCTGCTTTAATTCCTC
GAAATGAAACCTTCGATAAGCCTGCCATAATTCCTAAGGAAAACAGAATAGTGCAAATTA
TGAGATATGGATTCCCTTCTCTCGATAATGTTCGCTCATTTGATGATTTTGTATTATCAT
ATGATCGGAGAATGCGAACTGCAGCTTGGGTTTTTGAACATTTGACTGCTGAAAGTGTAA
AGCATAACGATGCAGTCGATAGAGCGAAATGTGATTTTAAGCCAGATGAAAGCATACATC
CATTCTTTAGGGCGGATAATTCAGATTATAAAAAATCGGGGTATGATAGGGGACATTTAG
CTGCAGCTGGAAATCACAAAAGAGAACAGCGTCATATAGAGCAAACATTTTATTTAAGTA
ATATAAGTCCTCAAGTGGGAGTTGGATTCAATAGAGATAGCTGGAATAGATTAGAAAGAA
AGCTAACCAAAACCTTTAGAAATGTTTATGTTTGCACTGGACCACTTTATCTTCCTCGAA
AGGAAGCTAATGGGAAGCTTTATGTTAAATATGAAGTTATTGGGTCAAGTAACGTTGCAG
TGCCAACTCATTTTTTTAAAGTAGTCGTGTGTGAAGATGCTGATGGAAAATTAGAATTGG
AATCATATGTAATGCCTAATGAAGTAATTTCGGATGATACTCCTCTTGAAAATTTTAGAG
TTCCACCTGAAAGCATCGAACGAGCAGCAGGATTGCTGTTTTTTGATAAAATTAATAGGA
AAATGCTCAGTAAAATAAATGGAAAAAAATTATAG

>g13917.t2 Gene=g13917 Length=231
MRYGFPSLDNVRSFDDFVLSYDRRMRTAAWVFEHLTAESVKHNDAVDRAKCDFKPDESIH
PFFRADNSDYKKSGYDRGHLAAAGNHKREQRHIEQTFYLSNISPQVGVGFNRDSWNRLER
KLTKTFRNVYVCTGPLYLPRKEANGKLYVKYEVIGSSNVAVPTHFFKVVVCEDADGKLEL
ESYVMPNEVISDDTPLENFRVPPESIERAAGLLFFDKINRKMLSKINGKKL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g13917.t2 CDD cd00091 NUC 3 230 4.37774E-81
8 g13917.t2 Gene3D G3DSA:3.40.570.10 Extracellular Endonuclease 1 231 5.6E-104
2 g13917.t2 PANTHER PTHR13966 ENDONUCLEASE RELATED 1 225 2.2E-86
3 g13917.t2 PANTHER PTHR13966:SF5 ENDONUCLEASE G, MITOCHONDRIAL 1 225 2.2E-86
1 g13917.t2 Pfam PF01223 DNA/RNA non-specific endonuclease 2 220 1.5E-59
7 g13917.t2 ProSitePatterns PS01070 DNA/RNA non-specific endonucleases active site. 76 84 -
6 g13917.t2 SMART SM00892 Endonuclease_NS_2 13 221 1.0E-78
5 g13917.t2 SMART SM00477 endoplus 14 221 3.2E-90
4 g13917.t2 SUPERFAMILY SSF54060 His-Me finger endonucleases 2 226 4.59E-63

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0046872 metal ion binding MF
GO:0016787 hydrolase activity MF
GO:0003676 nucleic acid binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed