Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Endonuclease G, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13917 g13917.t5 TSS g13917.t5 33395561 33395561
chr_1 g13917 g13917.t5 isoform g13917.t5 33395622 33396746
chr_1 g13917 g13917.t5 exon g13917.t5.exon1 33395622 33396105
chr_1 g13917 g13917.t5 cds g13917.t5.CDS1 33395926 33396105
chr_1 g13917 g13917.t5 exon g13917.t5.exon2 33396169 33396746
chr_1 g13917 g13917.t5 cds g13917.t5.CDS2 33396169 33396351
chr_1 g13917 g13917.t5 TTS g13917.t5 33396795 33396795

Sequences

>g13917.t5 Gene=g13917 Length=1062
ATGAGACTACACGCAGTAAACACAGTGAAAAAATTAGTGTTAATATCAGGAATTAGTGGA
CTTTCATATTACGCTGGACGTCAATCAATAGAAAATAAATTAGAATCTGTAAATTAGAAA
GAATTTGTCTTTTGTGTAAAAACTTAATTTTTTTATTTTACAGTGCCAAAAAGAGACTAA
AAATTTATTAAGTAAACCAGCACTGCCTATATTCAGCACAGTATCAGCTGCTGCTTTAAT
TCCTCGAAATGAAACCTTCGATAAGCCTGCCATAATTCCTAAGGAAAACAGAATAGTGCA
AATTATGAGATATGGATTCCCTTCTCTCGATAATGTTCGCTCATTTGATGATTTTGTATT
ATCATATGATCGGAGAATGCGAACTGCAGCTTGGGTTTTTGAACATTTGACTGCTGAAAG
TGTAAAGCATAACGATGCAGTCGATAGAGCGAAATGTGATTTTAAGCCAGATGAAAGCAT
ACATCCATTCTTTAGGGCGGATAATTCAGATTATAAAAAATCGGGGTATGATAGGGGACA
TTTAGCTGCAGCTGGAAATCACAAAAGAGAACAGCGTCATATAGAGCAAACATTTTATTT
AAGTAATATAAGTCCTCAAGTGGGAGTTGGATTCAATAGAGATAGCTGGAATAGATTAGA
AAGGTAAGTATTATATTTGCGTAACCTGTTTCAATTACTAATAAATTATTACACAGATAT
GTAAGAAAGCTAACCAAAACCTTTAGAAATGTTTATGTTTGCACTGGACCACTTTATCTT
CCTCGAAAGGAAGCTAATGGGAAGCTTTATGTTAAATATGAAGTTATTGGGTCAAGTAAC
GTTGCAGTGCCAACTCATTTTTTTAAAGTAGTCGTGTGTGAAGATGCTGATGGAAAATTA
GAATTGGAATCATATGTAATGCCTAATGAAGTAATTTCGGATGATACTCCTCTTGAAAAT
TTTAGAGTTCCACCTGAAAGCATCGAACGAGCAGCAGGATTGCTGTTTTTTGATAAAATT
AATAGGAAAATGCTCAGTAAAATAAATGGAAAAAAATTATAG

>g13917.t5 Gene=g13917 Length=120
MRYGFPSLDNVRSFDDFVLSYDRRMRTAAWVFEHLTAESVKHNDAVDRAKCDFKPDESIH
PFFRADNSDYKKSGYDRGHLAAAGNHKREQRHIEQTFYLSNISPQVGVGFNRDSWNRLER

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g13917.t5 Gene3D G3DSA:3.40.570.10 Extracellular Endonuclease 1 120 2.3E-54
2 g13917.t5 PANTHER PTHR13966 ENDONUCLEASE RELATED 1 120 2.0E-46
3 g13917.t5 PANTHER PTHR13966:SF5 ENDONUCLEASE G, MITOCHONDRIAL 1 120 2.0E-46
1 g13917.t5 Pfam PF01223 DNA/RNA non-specific endonuclease 2 119 1.6E-31
7 g13917.t5 ProSitePatterns PS01070 DNA/RNA non-specific endonucleases active site. 76 84 -
6 g13917.t5 SMART SM00892 Endonuclease_NS_2 13 120 4.7E-4
5 g13917.t5 SMART SM00477 endoplus 14 120 3.7E-8
4 g13917.t5 SUPERFAMILY SSF54060 His-Me finger endonucleases 1 120 1.41E-35

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0046872 metal ion binding MF
GO:0016787 hydrolase activity MF
GO:0003676 nucleic acid binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed