Gene loci information

Transcript annotation

  • This transcript has been annotated as Endonuclease G, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13917 g13917.t7 TSS g13917.t7 33395561 33395561
chr_1 g13917 g13917.t7 isoform g13917.t7 33395622 33396746
chr_1 g13917 g13917.t7 exon g13917.t7.exon1 33395622 33396105
chr_1 g13917 g13917.t7 cds g13917.t7.CDS1 33395926 33396105
chr_1 g13917 g13917.t7 exon g13917.t7.exon2 33396169 33396347
chr_1 g13917 g13917.t7 cds g13917.t7.CDS2 33396169 33396347
chr_1 g13917 g13917.t7 exon g13917.t7.exon3 33396401 33396746
chr_1 g13917 g13917.t7 cds g13917.t7.CDS3 33396401 33396746
chr_1 g13917 g13917.t7 TTS g13917.t7 33396795 33396795

Sequences

>g13917.t7 Gene=g13917 Length=1009
ATGAGACTACACGCAGTAAACACAGTGAAAAAATTAGTGTTAATATCAGGAATTAGTGGA
CTTTCATATTACGCTGGACGTCAATCAATAGAAAATAAATTAGAATCTGTAAATTAGAAA
GAATTTGTCTTTTGTGTAAAAACTTAATTTTTTTATTTTACAGTGCCAAAAAGAGACTAA
AAATTTATTAAGTAAACCAGCACTGCCTATATTCAGCACAGTATCAGCTGCTGCTTTAAT
TCCTCGAAATGAAACCTTCGATAAGCCTGCCATAATTCCTAAGGAAAACAGAATAGTGCA
AATTATGAGATATGGATTCCCTTCTCTCGATAATGTTCGCTCATTTGATGATTTTGTATT
ATCATATGATCGGAGAATGCGAACTGCAGCTTGGGTTTTTGAACATTTGACTGCTGAAAG
TGTAAAGCATAACGATGCAGTCGATAGAGCGAAATGTGATTTTAAGCCAGATGAAAGCAT
ACATCCATTCTTTAGGGCGGATAATTCAGATTATAAAAAATCGGGGTATGATAGGGGACA
TTTAGCTGCAGCTGGAAATCACAAAAGAGAACAGCGTCATATAGAGCAAACATTTTATTT
AAGTAATATAAGTCCTCAAGTGGGAGTTGGATTCAATAGAGATAGCTGGAATAGATTAGA
AAGATATGTAAGAAAGCTAACCAAAACCTTTAGAAATGTTTATGTTTGCACTGGACCACT
TTATCTTCCTCGAAAGGAAGCTAATGGGAAGCTTTATGTTAAATATGAAGTTATTGGGTC
AAGTAACGTTGCAGTGCCAACTCATTTTTTTAAAGTAGTCGTGTGTGAAGATGCTGATGG
AAAATTAGAATTGGAATCATATGTAATGCCTAATGAAGTAATTTCGGATGATACTCCTCT
TGAAAATTTTAGAGTTCCACCTGAAAGCATCGAACGAGCAGCAGGATTGCTGTTTTTTGA
TAAAATTAATAGGAAAATGCTCAGTAAAATAAATGGAAAAAAATTATAG

>g13917.t7 Gene=g13917 Length=234
MRYGFPSLDNVRSFDDFVLSYDRRMRTAAWVFEHLTAESVKHNDAVDRAKCDFKPDESIH
PFFRADNSDYKKSGYDRGHLAAAGNHKREQRHIEQTFYLSNISPQVGVGFNRDSWNRLER
YVRKLTKTFRNVYVCTGPLYLPRKEANGKLYVKYEVIGSSNVAVPTHFFKVVVCEDADGK
LELESYVMPNEVISDDTPLENFRVPPESIERAAGLLFFDKINRKMLSKINGKKL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g13917.t7 CDD cd00091 NUC 3 233 5.57312E-84
8 g13917.t7 Gene3D G3DSA:3.40.570.10 Extracellular Endonuclease 1 234 9.3E-109
2 g13917.t7 PANTHER PTHR13966 ENDONUCLEASE RELATED 1 228 2.2E-91
3 g13917.t7 PANTHER PTHR13966:SF5 ENDONUCLEASE G, MITOCHONDRIAL 1 228 2.2E-91
1 g13917.t7 Pfam PF01223 DNA/RNA non-specific endonuclease 2 223 1.0E-63
7 g13917.t7 ProSitePatterns PS01070 DNA/RNA non-specific endonucleases active site. 76 84 -
6 g13917.t7 SMART SM00892 Endonuclease_NS_2 13 224 7.0E-83
5 g13917.t7 SMART SM00477 endoplus 14 224 4.3E-95
4 g13917.t7 SUPERFAMILY SSF54060 His-Me finger endonucleases 2 229 2.71E-67

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0046872 metal ion binding MF
GO:0016787 hydrolase activity MF
GO:0003676 nucleic acid binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values