General information for g1392.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Glutamyl aminopeptidase.
Parent gene
- The parent gene g1392 is located on chr_3: 10624726..10626545 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1392 | g1392.t3 | TTS | g1392.t3 | 10622801 | 10622801 |
| chr_3 | g1392 | g1392.t3 | isoform | g1392.t3 | 10622879 | 10623609 |
| chr_3 | g1392 | g1392.t3 | exon | g1392.t3.exon1 | 10622879 | 10623530 |
| chr_3 | g1392 | g1392.t3 | cds | g1392.t3.CDS1 | 10622879 | 10623475 |
| chr_3 | g1392 | g1392.t3 | exon | g1392.t3.exon2 | 10623587 | 10623609 |
| chr_3 | g1392 | g1392.t3 | TSS | g1392.t3 | NA | NA |
Sequences
>g1392.t3 Gene=g1392 Length=675
AATATCAATGCACATCTTGATAATTTAAAACGCATAACTATTCTCGATTTGGCTTGCTCA
TTTGATCATGTAGAATGCATGAATGAAGTTGGTATCCGTTTCCGTCAATGGTTAAATAAC
CCAGACGAACGTCCTCATCCTGATTTGCGCTCACTTATCTATTATCACGGCATGCGATCA
GTTGGTAATAAAAATGATTGGGATAAGATGTTTGAAATTTTCGCAGCTGAAAATGATGCA
ACAGAAAAATCTAAGCTTCAGTCAGCTCTTGCAGCTATTCAAGATCCAGTTATTTTAATG
AAATATATTGAGCTTGCATCAGCAAATGAAACTTATGTGAGAAGTCAAGATTACTTTAAT
CTTCTTGCATCTGTTGCTGGCAATCGGGCAGGTGAAATGCTTGTATGGGACTTTGTAAGA
ATGAATTGGGAAAAATTGGTTCAAAAGTTCACATTGAATGAAAGAAATTTAGGAAGAATG
ATTCCTAATGTAACAAATAAATTTTCAAGTGAAATTCGCTTAAAAGAAATGCAAAATTTC
TTCAATGAGTATCCTGAAGCAGGTGCAGGAGCGAACGCGCGGAAGCAAGCTCTTGAGAAT
ATTCAAAATAACATAAAATGGTTGAAAAATAACAAGCAATCAATTGGTGATTTCTTGCAA
AGTTTGAACTTGTAA
>g1392.t3 Gene=g1392 Length=198
MNEVGIRFRQWLNNPDERPHPDLRSLIYYHGMRSVGNKNDWDKMFEIFAAENDATEKSKL
QSALAAIQDPVILMKYIELASANETYVRSQDYFNLLASVAGNRAGEMLVWDFVRMNWEKL
VQKFTLNERNLGRMIPNVTNKFSSEIRLKEMQNFFNEYPEAGAGANARKQALENIQNNIK
WLKNNKQSIGDFLQSLNL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g1392.t3 | Coils | Coil | Coil | 165 | 185 | - |
| 4 | g1392.t3 | Gene3D | G3DSA:1.25.50.20 | - | 1 | 197 | 6.8E-58 |
| 2 | g1392.t3 | PANTHER | PTHR11533:SF273 | AMINOPEPTIDASE-RELATED | 2 | 194 | 9.2E-83 |
| 3 | g1392.t3 | PANTHER | PTHR11533 | PROTEASE M1 ZINC METALLOPROTEASE | 2 | 194 | 9.2E-83 |
| 1 | g1392.t3 | Pfam | PF11838 | ERAP1-like C-terminal domain | 6 | 176 | 5.4E-35 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
