General information for g1392.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Leucyl-cystinyl aminopeptidase.
Parent gene
- The parent gene g1392 is located on chr_3: 10624726..10626545 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1392 | g1392.t5 | isoform | g1392.t5 | 10624726 | 10626545 |
| chr_3 | g1392 | g1392.t5 | exon | g1392.t5.exon1 | 10624726 | 10624835 |
| chr_3 | g1392 | g1392.t5 | exon | g1392.t5.exon2 | 10624975 | 10625039 |
| chr_3 | g1392 | g1392.t5 | cds | g1392.t5.CDS1 | 10625005 | 10625039 |
| chr_3 | g1392 | g1392.t5 | exon | g1392.t5.exon3 | 10625106 | 10625524 |
| chr_3 | g1392 | g1392.t5 | cds | g1392.t5.CDS2 | 10625106 | 10625524 |
| chr_3 | g1392 | g1392.t5 | exon | g1392.t5.exon4 | 10625615 | 10626545 |
| chr_3 | g1392 | g1392.t5 | cds | g1392.t5.CDS3 | 10625615 | 10626021 |
| chr_3 | g1392 | g1392.t5 | TSS | g1392.t5 | NA | NA |
| chr_3 | g1392 | g1392.t5 | TTS | g1392.t5 | NA | NA |
Sequences
>g1392.t5 Gene=g1392 Length=1525
ATGCCAAATCAAAATAATTTAATTAGACCATCAAGTTATAGCTCTTCTTCAAAGCAGCAT
CTTGATAAAGTTGAGCTATCTAGGAAAAGAACATCCATTTTAATATTAACGTTGATATCA
TTAGTCATATTTTTATTCATTTTATGTAAGTAACATTTATGCGCACTATAGAGATAAAAT
ATTTTTTTGTGCTTTTTGGTTAGAGTTCTCCATAGCGCCGGTTTAGTTTGTTTTGCTTTT
GCACAATCATTGTAGTTTTCATTTTTGAATTTTAAAATTACACTTCAATCAATTAATCAA
GTACTTTATATCATATCATTTTCATCTTTTTCACAGCTTTATTGTTAATCTGTGCATTAG
TAGTTGTTGGAAAAGGTTTATCACAAAAAAACGATAGCCTATCGGACATAAATACTCAGC
AAACAGTTTCAAGTATTTCATTGATAAATCATTTGTCGAATAATATTAATAAGAACAAAA
TTGATACGAGTACTGAATCAAAGTTTAGTGTGAACGGAAACAGCATGAGTATGAATAGAA
TTGTAGACAATTTAACATTTCGTTTACCACGGCAAATTACACCATCACTTTACAACTTAT
TTCTTCATCCTGATCTAAAGAAAAAGACATTTAGAGGAAATGTAAAAATTGATATTCAAG
TCTCAGAACAAATGCCATTCCTTGCACTCCATTCAAAATTTCTTAACATCACGCAAGTAA
AGTTGATGAAAAGTTTAGTCAATGGAAAAGAAGGATTGAATGTGAAGAATTCATTCATGT
ATGATAAATTTGAGTTCTTTATCATTGAGCCAGAACAGCCACTTGCTGTCGGAAATTATA
CGGTTGACTTAGATTTTGAAGGCTCACTTGATGGAAAAATTGTTGGTTTTTACGGAAGTT
CATATTTAGATAAAATGAAAAATCAAACGAGGTATATTGCAACATCTAAATTTGAACCAA
CATTTGCTCGACAATCTTTCCCGTGCTTTGATGAACCTTCCATGAAAGCAAAATTTAAAA
TTTCATTGATAAGTCCAAAAGATGATGGATATCATGCTTTATCAAACATGAATGTAGAAT
CAATTGAAGATTATGATGAAAACTTCATGAAATATAACTTTTTTGAGTCCGTTCCTATGT
CAACATACCTCACAGTATTTATTGTGTCAAATTTTCAAAATAAGTCACAAATGGTAAATG
TTAATTCTACTATTGGTGAGCCATTCTTACTGAGCGTTTACTCAACACCTCAACAAATCG
ATAAGACTGATTATGCTCTTGAAACAGCAAAGAAAGTTATTGAGTACTACATTCAATACT
TTAATATAAAATATCCATTACCTAAATTAGATCTTGCTGCTATACCAGATTTTGTTAGTG
GGTAAGTTATAATAGTAGATGCAACTACAGAACATACAGAGAAACAAATTTGCTTTATGA
TGCAAAAGTAAGTTCAACAGCAAACAAGCAGAGAATTGCATCAGTTATTTCACATGAATT
AGCGCATATGTATTTTGGAAATTTG
>g1392.t5 Gene=g1392 Length=286
MSMNRIVDNLTFRLPRQITPSLYNLFLHPDLKKKTFRGNVKIDIQVSEQMPFLALHSKFL
NITQVKLMKSLVNGKEGLNVKNSFMYDKFEFFIIEPEQPLAVGNYTVDLDFEGSLDGKIV
GFYGSSYLDKMKNQTRYIATSKFEPTFARQSFPCFDEPSMKAKFKISLISPKDDGYHALS
NMNVESIEDYDENFMKYNFFESVPMSTYLTVFIVSNFQNKSQMVNVNSTIGEPFLLSVYS
TPQQIDKTDYALETAKKVIEYYIQYFNIKYPLPKLDLAAIPDFVSG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g1392.t5 | CDD | cd09601 | M1_APN-Q_like | 23 | 286 | 0 |
| 8 | g1392.t5 | Gene3D | G3DSA:2.60.40.1730 | tricorn interacting facor f3 domain | 4 | 217 | 0 |
| 9 | g1392.t5 | Gene3D | G3DSA:1.10.1740.60 | - | 220 | 286 | 0 |
| 2 | g1392.t5 | PANTHER | PTHR11533:SF273 | AMINOPEPTIDASE-RELATED | 5 | 286 | 0 |
| 3 | g1392.t5 | PANTHER | PTHR11533 | PROTEASE M1 ZINC METALLOPROTEASE | 5 | 286 | 0 |
| 4 | g1392.t5 | PRINTS | PR00756 | Membrane alanyl dipeptidase (M1) family signature | 149 | 164 | 0 |
| 5 | g1392.t5 | PRINTS | PR00756 | Membrane alanyl dipeptidase (M1) family signature | 199 | 214 | 0 |
| 1 | g1392.t5 | Pfam | PF17900 | Peptidase M1 N-terminal domain | 20 | 209 | 0 |
| 7 | g1392.t5 | SUPERFAMILY | SSF63737 | Leukotriene A4 hydrolase N-terminal domain | 5 | 215 | 0 |
| 6 | g1392.t5 | SUPERFAMILY | SSF55486 | Metalloproteases (zincins), catalytic domain | 235 | 286 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006508 | proteolysis | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
