Gene loci information

Transcript annotation

  • This transcript has been annotated as Fructose-1,6-bisphosphatase 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13920 g13920.t11 TTS g13920.t11 33419370 33419370
chr_1 g13920 g13920.t11 isoform g13920.t11 33419575 33421484
chr_1 g13920 g13920.t11 exon g13920.t11.exon1 33419575 33420409
chr_1 g13920 g13920.t11 cds g13920.t11.CDS1 33419575 33420409
chr_1 g13920 g13920.t11 exon g13920.t11.exon2 33420811 33420905
chr_1 g13920 g13920.t11 cds g13920.t11.CDS2 33420811 33420905
chr_1 g13920 g13920.t11 exon g13920.t11.exon3 33420974 33421059
chr_1 g13920 g13920.t11 cds g13920.t11.CDS3 33420974 33421054
chr_1 g13920 g13920.t11 exon g13920.t11.exon4 33421413 33421484
chr_1 g13920 g13920.t11 TSS g13920.t11 33421514 33421514

Sequences

>g13920.t11 Gene=g13920 Length=1088
AGTGCGTTTTGAAAATTGAAGTTTGTTTATTCTTTTAACCTTAGACATAGTAAGAAAATT
TTTAAAAAGTTATAGAAATGTCACAAAAAGGCGAAGCTTTTGACTCTAACTGCATGACAT
TGACTCGTTTCATCATTCAGGAGCAAAAGAAACATAAGCATGCAACAGGTGAATTGACTC
AACTTTTACAAAGCATTCAGACTGCAGTGAAGGCCATCAGTTCAGCTGTCCGTAAAGCTG
GTATTGCCCGTTTATATGGACTTGCTGGTGATACAAATGTACAAGGAGAAGTTGTAAAGA
AACTCGATGTACTCTCGAATGATATGTTTATCAATATGCTCCAATCATCCTATACAACTT
GCTTGCTTGTATCTGAGGAGAATGAAACGGTGATTGAGATAGAAACGGACAAACGTGGTA
AATACATAGTTTGTTTTGATCCACTTGATGGCTCATCGAATATCGACTGCCTTGTGTCGA
TTGGTTCAATTTTTTGTGTCTATAAGAAGATAACAGAGGGTGAGCCAAATGTTAATGATG
CATTGCAATGTGGAAGAAAGCTTGTTGCTGCCGGTTACACACTCTATGGTTCAGCAACAA
TGTTTGTGCTCGCACTTCAGTCAGGCGGTGTTAATGGTTTCACATATGATCCAAGCATTG
GTGAATTTGTTCTTACTGATGCCAACATGAGAATCCCAGAGCGTGGAAACATTTATTCGA
TCAATGAAGGTTACTTTTCACAATGGGATAGTTCAGTGCAAGAATATGTACAAGCGAAGA
AAGATCCAACAAAGGGAAAGACTTATGGTGCTCGTTATGTCGGCTCAATGGTTGCAGATG
TTCATCGTACTATAAAATATGGAGGAATTTTCATTTATCCGGCAACCGCATCGGCAAAGA
ATGGAAAACTTCGTTTGCTCTACGAGTGCAATCCAATGGCATTTGTAGTTGAAAAAGCAG
GAGGCAAAGCAAGTGCAGGAAAGGACTTGGAAATTCTCGATATTGTACCAACTGCCATAC
ATCAGCGTTCTCCAATTTACCTCGGTAGTCGCTTAGATGTTGAGGAAGCACTCAGCTATA
TTAAGTGA

>g13920.t11 Gene=g13920 Length=336
MSQKGEAFDSNCMTLTRFIIQEQKKHKHATGELTQLLQSIQTAVKAISSAVRKAGIARLY
GLAGDTNVQGEVVKKLDVLSNDMFINMLQSSYTTCLLVSEENETVIEIETDKRGKYIVCF
DPLDGSSNIDCLVSIGSIFCVYKKITEGEPNVNDALQCGRKLVAAGYTLYGSATMFVLAL
QSGGVNGFTYDPSIGEFVLTDANMRIPERGNIYSINEGYFSQWDSSVQEYVQAKKDPTKG
KTYGARYVGSMVADVHRTIKYGGIFIYPATASAKNGKLRLLYECNPMAFVVEKAGGKASA
GKDLEILDIVPTAIHQRSPIYLGSRLDVEEALSYIK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
17 g13920.t11 CDD cd00354 FBPase 19 335 1.11258E-180
13 g13920.t11 Gene3D G3DSA:3.30.540.10 - 3 203 4.6E-86
14 g13920.t11 Gene3D G3DSA:3.40.190.80 - 204 336 4.8E-57
5 g13920.t11 Hamap MF_01855 Fructose-1,6-bisphosphatase class 1 [fbp]. 13 336 37.965576
3 g13920.t11 PANTHER PTHR11556 FRUCTOSE-1,6-BISPHOSPHATASE-RELATED 6 334 1.8E-147
4 g13920.t11 PANTHER PTHR11556:SF11 FRUCTOSE-1,6-BISPHOSPHATASE 1 6 334 1.8E-147
15 g13920.t11 PIRSF PIRSF500210 FBPtase 9 336 1.8E-122
16 g13920.t11 PIRSF PIRSF000904 FBPtase_SBPase 9 336 7.3E-122
11 g13920.t11 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 38 65 1.7E-64
10 g13920.t11 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 75 101 1.7E-64
8 g13920.t11 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 155 178 1.7E-64
6 g13920.t11 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 187 210 1.7E-64
9 g13920.t11 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 213 240 1.7E-64
7 g13920.t11 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 311 336 1.7E-64
2 g13920.t11 Pfam PF00316 Fructose-1-6-bisphosphatase, N-terminal domain 13 201 1.6E-76
1 g13920.t11 Pfam PF18913 Fructose-1-6-bisphosphatase, C-terminal domain 206 334 2.5E-51
18 g13920.t11 ProSitePatterns PS00124 Fructose-1-6-bisphosphatase active site. 276 288 -
12 g13920.t11 SUPERFAMILY SSF56655 Carbohydrate phosphatase 8 335 2.08E-114

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005975 carbohydrate metabolic process BP
GO:0042578 phosphoric ester hydrolase activity MF
GO:0042132 fructose 1,6-bisphosphate 1-phosphatase activity MF
GO:0016791 phosphatase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed