Gene loci information

Transcript annotation

  • This transcript has been annotated as Fructose-1,6-bisphosphatase 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13920 g13920.t19 TTS g13920.t19 33419370 33419370
chr_1 g13920 g13920.t19 isoform g13920.t19 33419575 33421514
chr_1 g13920 g13920.t19 exon g13920.t19.exon1 33419575 33420409
chr_1 g13920 g13920.t19 cds g13920.t19.CDS1 33419575 33420339
chr_1 g13920 g13920.t19 exon g13920.t19.exon2 33420811 33420991
chr_1 g13920 g13920.t19 exon g13920.t19.exon3 33421436 33421514
chr_1 g13920 g13920.t19 TSS g13920.t19 33421514 33421514

Sequences

>g13920.t19 Gene=g13920 Length=1095
AGTCGAAAATTTGTTGCCGTAGCGAGCAGCAGTGCGTTTTGAAAATTGAAGTTTGTTTAT
TCTTTTAACCTTAGACATAGAGCAAAAGAAACATAAGGTAAGCAATTTTCTTCTTTTAAC
AATTGTTGTACATAATAGTAACACAAAAATTATATATACAAATAGCATGCAACAGGTGAA
TTGACTCAACTTTTACAAAGCATTCAGACTGCAGTGAAGGCCATCAGTTCAGCTGTCCGT
AAAGCTGGTATTGCCCGTTTATATGGACTTGCTGGTGATACAAATGTACAAGGAGAAGTT
GTAAAGAAACTCGATGTACTCTCGAATGATATGTTTATCAATATGCTCCAATCATCCTAT
ACAACTTGCTTGCTTGTATCTGAGGAGAATGAAACGGTGATTGAGATAGAAACGGACAAA
CGTGGTAAATACATAGTTTGTTTTGATCCACTTGATGGCTCATCGAATATCGACTGCCTT
GTGTCGATTGGTTCAATTTTTTGTGTCTATAAGAAGATAACAGAGGGTGAGCCAAATGTT
AATGATGCATTGCAATGTGGAAGAAAGCTTGTTGCTGCCGGTTACACACTCTATGGTTCA
GCAACAATGTTTGTGCTCGCACTTCAGTCAGGCGGTGTTAATGGTTTCACATATGATCCA
AGCATTGGTGAATTTGTTCTTACTGATGCCAACATGAGAATCCCAGAGCGTGGAAACATT
TATTCGATCAATGAAGGTTACTTTTCACAATGGGATAGTTCAGTGCAAGAATATGTACAA
GCGAAGAAAGATCCAACAAAGGGAAAGACTTATGGTGCTCGTTATGTCGGCTCAATGGTT
GCAGATGTTCATCGTACTATAAAATATGGAGGAATTTTCATTTATCCGGCAACCGCATCG
GCAAAGAATGGAAAACTTCGTTTGCTCTACGAGTGCAATCCAATGGCATTTGTAGTTGAA
AAAGCAGGAGGCAAAGCAAGTGCAGGAAAGGACTTGGAAATTCTCGATATTGTACCAACT
GCCATACATCAGCGTTCTCCAATTTACCTCGGTAGTCGCTTAGATGTTGAGGAAGCACTC
AGCTATATTAAGTGA

>g13920.t19 Gene=g13920 Length=254
MFINMLQSSYTTCLLVSEENETVIEIETDKRGKYIVCFDPLDGSSNIDCLVSIGSIFCVY
KKITEGEPNVNDALQCGRKLVAAGYTLYGSATMFVLALQSGGVNGFTYDPSIGEFVLTDA
NMRIPERGNIYSINEGYFSQWDSSVQEYVQAKKDPTKGKTYGARYVGSMVADVHRTIKYG
GIFIYPATASAKNGKLRLLYECNPMAFVVEKAGGKASAGKDLEILDIVPTAIHQRSPIYL
GSRLDVEEALSYIK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g13920.t19 CDD cd00354 FBPase 1 253 5.39008E-146
11 g13920.t19 Gene3D G3DSA:3.30.540.10 - 1 121 1.9E-52
12 g13920.t19 Gene3D G3DSA:3.40.190.80 - 122 254 2.5E-57
5 g13920.t19 Hamap MF_01855 Fructose-1,6-bisphosphatase class 1 [fbp]. 1 254 26.396519
3 g13920.t19 PANTHER PTHR11556 FRUCTOSE-1,6-BISPHOSPHATASE-RELATED 1 252 5.7E-112
4 g13920.t19 PANTHER PTHR11556:SF11 FRUCTOSE-1,6-BISPHOSPHATASE 1 1 252 5.7E-112
13 g13920.t19 PIRSF PIRSF500210 FBPtase 1 254 3.8E-101
14 g13920.t19 PIRSF PIRSF000904 FBPtase_SBPase 1 254 1.4E-100
9 g13920.t19 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 73 96 1.3E-40
7 g13920.t19 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 105 128 1.3E-40
8 g13920.t19 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 131 158 1.3E-40
6 g13920.t19 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 229 254 1.3E-40
2 g13920.t19 Pfam PF00316 Fructose-1-6-bisphosphatase, N-terminal domain 2 119 1.5E-46
1 g13920.t19 Pfam PF18913 Fructose-1-6-bisphosphatase, C-terminal domain 124 252 1.3E-51
16 g13920.t19 ProSitePatterns PS00124 Fructose-1-6-bisphosphatase active site. 194 206 -
10 g13920.t19 SUPERFAMILY SSF56655 Carbohydrate phosphatase 1 253 1.41E-90

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005975 carbohydrate metabolic process BP
GO:0042578 phosphoric ester hydrolase activity MF
GO:0042132 fructose 1,6-bisphosphate 1-phosphatase activity MF
GO:0016791 phosphatase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed