Gene loci information

Transcript annotation

  • This transcript has been annotated as Fructose-1,6-bisphosphatase 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13920 g13920.t21 TTS g13920.t21 33419370 33419370
chr_1 g13920 g13920.t21 isoform g13920.t21 33419575 33421514
chr_1 g13920 g13920.t21 exon g13920.t21.exon1 33419575 33420409
chr_1 g13920 g13920.t21 cds g13920.t21.CDS1 33419575 33420409
chr_1 g13920 g13920.t21 exon g13920.t21.exon2 33420811 33420905
chr_1 g13920 g13920.t21 cds g13920.t21.CDS2 33420811 33420905
chr_1 g13920 g13920.t21 exon g13920.t21.exon3 33420974 33421041
chr_1 g13920 g13920.t21 cds g13920.t21.CDS3 33420974 33421018
chr_1 g13920 g13920.t21 exon g13920.t21.exon4 33421413 33421514
chr_1 g13920 g13920.t21 TSS g13920.t21 33421514 33421514

Sequences

>g13920.t21 Gene=g13920 Length=1100
AGTCGAAAATTTGTTGCCGTAGCGAGCAGCAGTGCGTTTTGAAAATTGAAGTTTGTTTAT
TCTTTTAACCTTAGACATAGTAAGAAAATTTTTAAAAAGTTAGCGAAGCTTTTGACTCTA
ACTGCATGACATTGACTCGTTTCATCATTCAGGAGCAAAAGAAACATAAGCATGCAACAG
GTGAATTGACTCAACTTTTACAAAGCATTCAGACTGCAGTGAAGGCCATCAGTTCAGCTG
TCCGTAAAGCTGGTATTGCCCGTTTATATGGACTTGCTGGTGATACAAATGTACAAGGAG
AAGTTGTAAAGAAACTCGATGTACTCTCGAATGATATGTTTATCAATATGCTCCAATCAT
CCTATACAACTTGCTTGCTTGTATCTGAGGAGAATGAAACGGTGATTGAGATAGAAACGG
ACAAACGTGGTAAATACATAGTTTGTTTTGATCCACTTGATGGCTCATCGAATATCGACT
GCCTTGTGTCGATTGGTTCAATTTTTTGTGTCTATAAGAAGATAACAGAGGGTGAGCCAA
ATGTTAATGATGCATTGCAATGTGGAAGAAAGCTTGTTGCTGCCGGTTACACACTCTATG
GTTCAGCAACAATGTTTGTGCTCGCACTTCAGTCAGGCGGTGTTAATGGTTTCACATATG
ATCCAAGCATTGGTGAATTTGTTCTTACTGATGCCAACATGAGAATCCCAGAGCGTGGAA
ACATTTATTCGATCAATGAAGGTTACTTTTCACAATGGGATAGTTCAGTGCAAGAATATG
TACAAGCGAAGAAAGATCCAACAAAGGGAAAGACTTATGGTGCTCGTTATGTCGGCTCAA
TGGTTGCAGATGTTCATCGTACTATAAAATATGGAGGAATTTTCATTTATCCGGCAACCG
CATCGGCAAAGAATGGAAAACTTCGTTTGCTCTACGAGTGCAATCCAATGGCATTTGTAG
TTGAAAAAGCAGGAGGCAAAGCAAGTGCAGGAAAGGACTTGGAAATTCTCGATATTGTAC
CAACTGCCATACATCAGCGTTCTCCAATTTACCTCGGTAGTCGCTTAGATGTTGAGGAAG
CACTCAGCTATATTAAGTGA

>g13920.t21 Gene=g13920 Length=324
MTLTRFIIQEQKKHKHATGELTQLLQSIQTAVKAISSAVRKAGIARLYGLAGDTNVQGEV
VKKLDVLSNDMFINMLQSSYTTCLLVSEENETVIEIETDKRGKYIVCFDPLDGSSNIDCL
VSIGSIFCVYKKITEGEPNVNDALQCGRKLVAAGYTLYGSATMFVLALQSGGVNGFTYDP
SIGEFVLTDANMRIPERGNIYSINEGYFSQWDSSVQEYVQAKKDPTKGKTYGARYVGSMV
ADVHRTIKYGGIFIYPATASAKNGKLRLLYECNPMAFVVEKAGGKASAGKDLEILDIVPT
AIHQRSPIYLGSRLDVEEALSYIK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
17 g13920.t21 CDD cd00354 FBPase 7 323 1.63338E-180
13 g13920.t21 Gene3D G3DSA:3.30.540.10 - 1 191 2.6E-84
14 g13920.t21 Gene3D G3DSA:3.40.190.80 - 192 324 4.4E-57
5 g13920.t21 Hamap MF_01855 Fructose-1,6-bisphosphatase class 1 [fbp]. 1 324 37.965576
3 g13920.t21 PANTHER PTHR11556 FRUCTOSE-1,6-BISPHOSPHATASE-RELATED 1 322 1.2E-144
4 g13920.t21 PANTHER PTHR11556:SF11 FRUCTOSE-1,6-BISPHOSPHATASE 1 1 322 1.2E-144
15 g13920.t21 PIRSF PIRSF500210 FBPtase 1 324 6.1E-122
16 g13920.t21 PIRSF PIRSF000904 FBPtase_SBPase 1 324 3.0E-121
10 g13920.t21 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 26 53 1.4E-64
9 g13920.t21 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 63 89 1.4E-64
8 g13920.t21 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 143 166 1.4E-64
7 g13920.t21 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 175 198 1.4E-64
11 g13920.t21 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 201 228 1.4E-64
6 g13920.t21 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 299 324 1.4E-64
2 g13920.t21 Pfam PF00316 Fructose-1-6-bisphosphatase, N-terminal domain 1 189 1.5E-76
1 g13920.t21 Pfam PF18913 Fructose-1-6-bisphosphatase, C-terminal domain 194 322 2.3E-51
18 g13920.t21 ProSitePatterns PS00124 Fructose-1-6-bisphosphatase active site. 264 276 -
12 g13920.t21 SUPERFAMILY SSF56655 Carbohydrate phosphatase 1 323 6.35E-113

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005975 carbohydrate metabolic process BP
GO:0042578 phosphoric ester hydrolase activity MF
GO:0042132 fructose 1,6-bisphosphate 1-phosphatase activity MF
GO:0016791 phosphatase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed