Gene loci information

Transcript annotation

  • This transcript has been annotated as Fructose-1,6-bisphosphatase 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13920 g13920.t22 TTS g13920.t22 33419370 33419370
chr_1 g13920 g13920.t22 isoform g13920.t22 33419575 33421514
chr_1 g13920 g13920.t22 exon g13920.t22.exon1 33419575 33420409
chr_1 g13920 g13920.t22 cds g13920.t22.CDS1 33419575 33420409
chr_1 g13920 g13920.t22 exon g13920.t22.exon2 33420811 33420905
chr_1 g13920 g13920.t22 cds g13920.t22.CDS2 33420811 33420905
chr_1 g13920 g13920.t22 exon g13920.t22.exon3 33420974 33421056
chr_1 g13920 g13920.t22 cds g13920.t22.CDS3 33420974 33421056
chr_1 g13920 g13920.t22 exon g13920.t22.exon4 33421311 33421339
chr_1 g13920 g13920.t22 cds g13920.t22.CDS4 33421311 33421329
chr_1 g13920 g13920.t22 exon g13920.t22.exon5 33421417 33421514
chr_1 g13920 g13920.t22 TSS g13920.t22 33421514 33421514

Sequences

>g13920.t22 Gene=g13920 Length=1140
AGTCGAAAATTTGTTGCCGTAGCGAGCAGCAGTGCGTTTTGAAAATTGAAGTTTGTTTAT
TCTTTTAACCTTAGACATAGTAAGAAAATTTTTAAAAAACAATTTAAAATGTCATCGGAA
AATGATGAAATGTCACAAAAAGGCGAAGCTTTTGACTCTAACTGCATGACATTGACTCGT
TTCATCATTCAGGAGCAAAAGAAACATAAGCATGCAACAGGTGAATTGACTCAACTTTTA
CAAAGCATTCAGACTGCAGTGAAGGCCATCAGTTCAGCTGTCCGTAAAGCTGGTATTGCC
CGTTTATATGGACTTGCTGGTGATACAAATGTACAAGGAGAAGTTGTAAAGAAACTCGAT
GTACTCTCGAATGATATGTTTATCAATATGCTCCAATCATCCTATACAACTTGCTTGCTT
GTATCTGAGGAGAATGAAACGGTGATTGAGATAGAAACGGACAAACGTGGTAAATACATA
GTTTGTTTTGATCCACTTGATGGCTCATCGAATATCGACTGCCTTGTGTCGATTGGTTCA
ATTTTTTGTGTCTATAAGAAGATAACAGAGGGTGAGCCAAATGTTAATGATGCATTGCAA
TGTGGAAGAAAGCTTGTTGCTGCCGGTTACACACTCTATGGTTCAGCAACAATGTTTGTG
CTCGCACTTCAGTCAGGCGGTGTTAATGGTTTCACATATGATCCAAGCATTGGTGAATTT
GTTCTTACTGATGCCAACATGAGAATCCCAGAGCGTGGAAACATTTATTCGATCAATGAA
GGTTACTTTTCACAATGGGATAGTTCAGTGCAAGAATATGTACAAGCGAAGAAAGATCCA
ACAAAGGGAAAGACTTATGGTGCTCGTTATGTCGGCTCAATGGTTGCAGATGTTCATCGT
ACTATAAAATATGGAGGAATTTTCATTTATCCGGCAACCGCATCGGCAAAGAATGGAAAA
CTTCGTTTGCTCTACGAGTGCAATCCAATGGCATTTGTAGTTGAAAAAGCAGGAGGCAAA
GCAAGTGCAGGAAAGGACTTGGAAATTCTCGATATTGTACCAACTGCCATACATCAGCGT
TCTCCAATTTACCTCGGTAGTCGCTTAGATGTTGAGGAAGCACTCAGCTATATTAAGTGA

>g13920.t22 Gene=g13920 Length=343
MSSENDEMSQKGEAFDSNCMTLTRFIIQEQKKHKHATGELTQLLQSIQTAVKAISSAVRK
AGIARLYGLAGDTNVQGEVVKKLDVLSNDMFINMLQSSYTTCLLVSEENETVIEIETDKR
GKYIVCFDPLDGSSNIDCLVSIGSIFCVYKKITEGEPNVNDALQCGRKLVAAGYTLYGSA
TMFVLALQSGGVNGFTYDPSIGEFVLTDANMRIPERGNIYSINEGYFSQWDSSVQEYVQA
KKDPTKGKTYGARYVGSMVADVHRTIKYGGIFIYPATASAKNGKLRLLYECNPMAFVVEK
AGGKASAGKDLEILDIVPTAIHQRSPIYLGSRLDVEEALSYIK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
17 g13920.t22 CDD cd00354 FBPase 26 342 1.16177E-180
13 g13920.t22 Gene3D G3DSA:3.30.540.10 - 9 210 4.7E-86
14 g13920.t22 Gene3D G3DSA:3.40.190.80 - 211 343 5.0E-57
5 g13920.t22 Hamap MF_01855 Fructose-1,6-bisphosphatase class 1 [fbp]. 20 343 37.965576
3 g13920.t22 PANTHER PTHR11556 FRUCTOSE-1,6-BISPHOSPHATASE-RELATED 13 341 1.9E-147
4 g13920.t22 PANTHER PTHR11556:SF11 FRUCTOSE-1,6-BISPHOSPHATASE 1 13 341 1.9E-147
15 g13920.t22 PIRSF PIRSF500210 FBPtase 16 343 2.0E-122
16 g13920.t22 PIRSF PIRSF000904 FBPtase_SBPase 16 343 8.0E-122
11 g13920.t22 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 45 72 1.8E-64
8 g13920.t22 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 82 108 1.8E-64
9 g13920.t22 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 162 185 1.8E-64
6 g13920.t22 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 194 217 1.8E-64
10 g13920.t22 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 220 247 1.8E-64
7 g13920.t22 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 318 343 1.8E-64
2 g13920.t22 Pfam PF00316 Fructose-1-6-bisphosphatase, N-terminal domain 20 208 1.7E-76
1 g13920.t22 Pfam PF18913 Fructose-1-6-bisphosphatase, C-terminal domain 213 341 2.6E-51
18 g13920.t22 ProSitePatterns PS00124 Fructose-1-6-bisphosphatase active site. 283 295 -
12 g13920.t22 SUPERFAMILY SSF56655 Carbohydrate phosphatase 15 342 2.4E-114

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005975 carbohydrate metabolic process BP
GO:0042578 phosphoric ester hydrolase activity MF
GO:0042132 fructose 1,6-bisphosphate 1-phosphatase activity MF
GO:0016791 phosphatase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values