Gene loci information

Transcript annotation

  • This transcript has been annotated as Fructose-1,6-bisphosphatase 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g13920 g13920.t5 TTS g13920.t5 33419370 33419370
chr_1 g13920 g13920.t5 isoform g13920.t5 33419575 33420409
chr_1 g13920 g13920.t5 exon g13920.t5.exon1 33419575 33419744
chr_1 g13920 g13920.t5 cds g13920.t5.CDS1 33419575 33419744
chr_1 g13920 g13920.t5 exon g13920.t5.exon2 33419817 33420409
chr_1 g13920 g13920.t5 cds g13920.t5.CDS2 33419817 33420339
chr_1 g13920 g13920.t5 TSS g13920.t5 NA NA

Sequences

>g13920.t5 Gene=g13920 Length=763
ATATGGACTTGCTGGTGATACAAATGTACAAGGAGAAGTTGTAAAGAAACTCGATGTACT
CTCGAATGATATGTTTATCAATATGCTCCAATCATCCTATACAACTTGCTTGCTTGTATC
TGAGGAGAATGAAACGGTGATTGAGATAGAAACGGACAAACGTGGTAAATACATAGTTTG
TTTTGATCCACTTGATGGCTCATCGAATATCGACTGCCTTGTGTCGATTGGTTCAATTTT
TTGTGTCTATAAGAAGATAACAGAGGGTGAGCCAAATGTTAATGATGCATTGCAATGTGG
AAGAAAGCTTGTTGCTGCCGGTTACACACTCTATGGTTCAGCAACAATGTTTGTGCTCGC
ACTTCAGTCAGGCGGTGTTAATGGTTTCACATATGATCCAAGCATTGGTGAATTTGTTCT
TACTGATGCCAACATGAGAATCCCAGAGCGTGGAAACATTTATTCGATCAATGAAGGTTA
CTTTTCACAATGGGATAGTTCAGTGCAAGAATATGTACAAGCGAAGAAAGATCCAACAAA
GGGAAAGACTTATGGTGCTCGTTATGTCGGCTCAATGGTTGCAGATGTTCATCTCTACGA
GTGCAATCCAATGGCATTTGTAGTTGAAAAAGCAGGAGGCAAAGCAAGTGCAGGAAAGGA
CTTGGAAATTCTCGATATTGTACCAACTGCCATACATCAGCGTTCTCCAATTTACCTCGG
TAGTCGCTTAGATGTTGAGGAAGCACTCAGCTATATTAAGTGA

>g13920.t5 Gene=g13920 Length=230
MFINMLQSSYTTCLLVSEENETVIEIETDKRGKYIVCFDPLDGSSNIDCLVSIGSIFCVY
KKITEGEPNVNDALQCGRKLVAAGYTLYGSATMFVLALQSGGVNGFTYDPSIGEFVLTDA
NMRIPERGNIYSINEGYFSQWDSSVQEYVQAKKDPTKGKTYGARYVGSMVADVHLYECNP
MAFVVEKAGGKASAGKDLEILDIVPTAIHQRSPIYLGSRLDVEEALSYIK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
19 g13920.t5 CDD cd00354 FBPase 1 229 0
12 g13920.t5 Gene3D G3DSA:3.30.540.10 - 1 121 0
13 g13920.t5 Gene3D G3DSA:3.40.190.80 - 122 174 0
14 g13920.t5 Gene3D G3DSA:3.40.190.80 - 175 230 0
5 g13920.t5 PANTHER PTHR11556 FRUCTOSE-1,6-BISPHOSPHATASE-RELATED 1 174 0
7 g13920.t5 PANTHER PTHR11556:SF11 FRUCTOSE-1,6-BISPHOSPHATASE 1 1 174 0
4 g13920.t5 PANTHER PTHR11556 FRUCTOSE-1,6-BISPHOSPHATASE-RELATED 175 228 0
6 g13920.t5 PANTHER PTHR11556:SF11 FRUCTOSE-1,6-BISPHOSPHATASE 1 175 228 0
16 g13920.t5 PIRSF PIRSF500210 FBPtase 1 175 0
18 g13920.t5 PIRSF PIRSF000904 FBPtase_SBPase 1 175 0
15 g13920.t5 PIRSF PIRSF500210 FBPtase 174 230 0
17 g13920.t5 PIRSF PIRSF000904 FBPtase_SBPase 174 230 0
10 g13920.t5 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 73 96 0
8 g13920.t5 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 105 128 0
9 g13920.t5 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 131 158 0
3 g13920.t5 Pfam PF00316 Fructose-1-6-bisphosphatase, N-terminal domain 2 119 0
1 g13920.t5 Pfam PF18913 Fructose-1-6-bisphosphatase, C-terminal domain 124 174 0
2 g13920.t5 Pfam PF18913 Fructose-1-6-bisphosphatase, C-terminal domain 175 228 0
11 g13920.t5 SUPERFAMILY SSF56655 Carbohydrate phosphatase 1 229 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005975 carbohydrate metabolic process BP
GO:0042132 fructose 1,6-bisphosphate 1-phosphatase activity MF
GO:0016791 phosphatase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values