Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Speckle-type POZ protein-like.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1395 g1395.t1 isoform g1395.t1 10635524 10636620
chr_3 g1395 g1395.t1 exon g1395.t1.exon1 10635524 10635533
chr_3 g1395 g1395.t1 cds g1395.t1.CDS1 10635524 10635533
chr_3 g1395 g1395.t1 exon g1395.t1.exon2 10635600 10635961
chr_3 g1395 g1395.t1 cds g1395.t1.CDS2 10635600 10635961
chr_3 g1395 g1395.t1 exon g1395.t1.exon3 10636012 10636472
chr_3 g1395 g1395.t1 cds g1395.t1.CDS3 10636012 10636472
chr_3 g1395 g1395.t1 exon g1395.t1.exon4 10636524 10636620
chr_3 g1395 g1395.t1 cds g1395.t1.CDS4 10636524 10636620
chr_3 g1395 g1395.t1 TSS g1395.t1 NA NA
chr_3 g1395 g1395.t1 TTS g1395.t1 NA NA

Sequences

>g1395.t1 Gene=g1395 Length=930
ATGCAAAAGGAATACTTCTCGGATGAAATTGGAATTAAAACAAATTTTGAAAACGATTGT
TATAGCAATGCAATTTCTGATGAGGGTGAAGATGATTGTTATTGCAATAGTTTCGAAAAG
TGTTATTTTGAAAATTATGAGGAAGAGTCTGATGGTGAATCTTCTCCAGGATTCTATTTG
AAAGACTTTTGTAAATGTTTTCGTGAACGTATTTATCAAACAACTAAATGCTATATTAAA
ACAAGTGATAATGAAGAATATAAACTACTTAATAGTAGTAATTGTTGTAAGACACGTGTT
GAAAGTCGAAATTTATTGGATGTTGATGAAGATTTTACAACAAATTATGACAAATTTTCT
TTTATGATTAAGTTTAAGTTCAATTATGAAGTTAAACAGCGCATCATCACAAATCCATAT
GAAAATTATCTTGATAATAAATTTTTCAACGATATTACAATTGTTTGTTCGGATGGAATC
ACACTTCACGCAAATCGAATGATTTTGGCACTGAGTTCTCCTGTGTTTAAAACGATGTTT
GAAACTAATATGATTGAATGTGAAACAAAGAAGATCATACTTGATGATATCGATTCAAAA
ACAATGCAAGAATTTAAACGATTTGTTTATAGCAGCAAAGTTGAAAATTTGAAAGAACTT
GCAGTGCCTCTTTTATATGCATCAGATAAATACGAAGTTTCTGATCTTAAGGCAATTTGC
ATTGCACATCTTTCAAAAAATGTAAAGGAGGACAATGTTTTTGAAACTTTGAAAACAGCA
ATATTGTTCAACTTGAAGATTCTTATTCATCAATGTATCGGTTTTATCGCATTTTCTTAC
GAACGCTTTGAAAATACAACTGAAATCAAAAATTTGAGCGAAGAATTGCAAAATAAAATT
ATTAAAATGAAGAAGGAAATAGAAAATTAA

>g1395.t1 Gene=g1395 Length=309
MQKEYFSDEIGIKTNFENDCYSNAISDEGEDDCYCNSFEKCYFENYEEESDGESSPGFYL
KDFCKCFRERIYQTTKCYIKTSDNEEYKLLNSSNCCKTRVESRNLLDVDEDFTTNYDKFS
FMIKFKFNYEVKQRIITNPYENYLDNKFFNDITIVCSDGITLHANRMILALSSPVFKTMF
ETNMIECETKKIILDDIDSKTMQEFKRFVYSSKVENLKELAVPLLYASDKYEVSDLKAIC
IAHLSKNVKEDNVFETLKTAILFNLKILIHQCIGFIAFSYERFENTTEIKNLSEELQNKI
IKMKKEIEN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g1395.t1 CDD cd18186 BTB_POZ_ZBTB_KLHL-like 149 231 7.87006E-20
5 g1395.t1 Coils Coil Coil 286 309 -
4 g1395.t1 Gene3D G3DSA:3.30.710.10 Potassium Channel Kv1.1; Chain A 124 277 3.9E-36
2 g1395.t1 PANTHER PTHR24413 SPECKLE-TYPE POZ PROTEIN 80 296 8.4E-29
1 g1395.t1 Pfam PF00651 BTB/POZ domain 141 247 1.1E-21
8 g1395.t1 ProSiteProfiles PS50097 BTB domain profile. 150 218 16.011
7 g1395.t1 SMART SM00225 BTB_4 150 248 7.7E-19
3 g1395.t1 SUPERFAMILY SSF54695 POZ domain 131 246 7.4E-24

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed