General information for g1395.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Speckle-type POZ protein-like.
Parent gene
- The parent gene g1395 is located on chr_3: 10636620..10637438 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1395 | g1395.t2 | isoform | g1395.t2 | 10635524 | 10636620 |
| chr_3 | g1395 | g1395.t2 | exon | g1395.t2.exon1 | 10635524 | 10635533 |
| chr_3 | g1395 | g1395.t2 | cds | g1395.t2.CDS1 | 10635524 | 10635533 |
| chr_3 | g1395 | g1395.t2 | exon | g1395.t2.exon2 | 10635759 | 10635961 |
| chr_3 | g1395 | g1395.t2 | cds | g1395.t2.CDS2 | 10635759 | 10635961 |
| chr_3 | g1395 | g1395.t2 | exon | g1395.t2.exon3 | 10636012 | 10636472 |
| chr_3 | g1395 | g1395.t2 | cds | g1395.t2.CDS3 | 10636012 | 10636472 |
| chr_3 | g1395 | g1395.t2 | exon | g1395.t2.exon4 | 10636524 | 10636620 |
| chr_3 | g1395 | g1395.t2 | cds | g1395.t2.CDS4 | 10636524 | 10636620 |
| chr_3 | g1395 | g1395.t2 | TSS | g1395.t2 | NA | NA |
| chr_3 | g1395 | g1395.t2 | TTS | g1395.t2 | NA | NA |
Sequences
>g1395.t2 Gene=g1395 Length=771
ATGCAAAAGGGATTCTATTTGAAAGACTTTTGTAAATGTTTTCGTGAACGTATTTATCAA
ACAACTAAATGCTATATTAAAACAAGTGATAATGAAGAATATAAACTACTTAATAGTAGT
AATTGTTGTAAGACACGTGTTGAAAGTCGAAATTTATTGGATGTTGATGAAGATTTTACA
ACAAATTATGACAAATTTTCTTTTATGATTAAGTTTAAGTTCAATTATGAAGTTAAACAG
CGCATCATCACAAATCCATATGAAAATTATCTTGATAATAAATTTTTCAACGATATTACA
ATTGTTTGTTCGGATGGAATCACACTTCACGCAAATCGAATGATTTTGGCACTGAGTTCT
CCTGTGTTTAAAACGATGTTTGAAACTAATATGATTGAATGTGAAACAAAGAAGATCATA
CTTGATGATATCGATTCAAAAACAATGCAAGAATTTAAACGATTTGTTTATAGCAGCAAA
GTTGAAAATTTGAAAGAACTTGCAGTGCCTCTTTTATATGCATCAGATAAATACGAAGTT
TCTGATCTTAAGGCAATTTGCATTGCACATCTTTCAAAAAATGTAAAGGAGGACAATGTT
TTTGAAACTTTGAAAACAGCAATATTGTTCAACTTGAAGATTCTTATTCATCAATGTATC
GGTTTTATCGCATTTTCTTACGAACGCTTTGAAAATACAACTGAAATCAAAAATTTGAGC
GAAGAATTGCAAAATAAAATTATTAAAATGAAGAAGGAAATAGAAAATTAA
>g1395.t2 Gene=g1395 Length=256
MQKGFYLKDFCKCFRERIYQTTKCYIKTSDNEEYKLLNSSNCCKTRVESRNLLDVDEDFT
TNYDKFSFMIKFKFNYEVKQRIITNPYENYLDNKFFNDITIVCSDGITLHANRMILALSS
PVFKTMFETNMIECETKKIILDDIDSKTMQEFKRFVYSSKVENLKELAVPLLYASDKYEV
SDLKAICIAHLSKNVKEDNVFETLKTAILFNLKILIHQCIGFIAFSYERFENTTEIKNLS
EELQNKIIKMKKEIEN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g1395.t2 | CDD | cd18186 | BTB_POZ_ZBTB_KLHL-like | 96 | 178 | 3.73687E-20 |
| 5 | g1395.t2 | Coils | Coil | Coil | 233 | 256 | - |
| 4 | g1395.t2 | Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 71 | 224 | 2.4E-36 |
| 2 | g1395.t2 | PANTHER | PTHR24413 | SPECKLE-TYPE POZ PROTEIN | 56 | 243 | 1.3E-28 |
| 1 | g1395.t2 | Pfam | PF00651 | BTB/POZ domain | 88 | 194 | 7.1E-22 |
| 8 | g1395.t2 | ProSiteProfiles | PS50097 | BTB domain profile. | 97 | 165 | 16.011 |
| 7 | g1395.t2 | SMART | SM00225 | BTB_4 | 97 | 195 | 7.7E-19 |
| 3 | g1395.t2 | SUPERFAMILY | SSF54695 | POZ domain | 78 | 193 | 4.71E-24 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed