General information for g14005.t30
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g14005 is located on chr_1: 33965851..33967151 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14005 | g14005.t30 | isoform | g14005.t30 | 33965851 | 33967151 |
| chr_1 | g14005 | g14005.t30 | exon | g14005.t30.exon1 | 33965851 | 33967151 |
| chr_1 | g14005 | g14005.t30 | cds | g14005.t30.CDS1 | 33966582 | 33966740 |
| chr_1 | g14005 | g14005.t30 | TTS | g14005.t30 | 33967151 | 33967151 |
| chr_1 | g14005 | g14005.t30 | TSS | g14005.t30 | NA | NA |
Sequences
>g14005.t30 Gene=g14005 Length=1301
AGTTGCAGTCGATAACAAACAAGATCGATTTACCCATAAACGATTTTGTTGCATCGATTG
AAAACCCCGAAGAGTTTGAGAACATCGAAGGATCTAAAAGTGAGCAATTGCTACTTGATT
TCAACTCCATTTTCGATGGTGTTGAAAATGAATTGACACCACCACAATCACCACCACAAT
TATTTACTTCATCTTTGCAAGAACAACAACAATTTTCACCAAACAACATTCCAGCAACAG
TCAATAATCAATATGAATTTTTCAACACTTATCAACCAGTTCAACAAGCATTAACACAAG
GGGAACAGTTTATTTACATTCAAAATGCATCTCCTGCTGCATCCACTCCATCGCAAGGAA
ATGTAGAAGTTTCTATCGTTTATGAAAACAACAATCAATCGATTATACCTAGTGATGAAA
TTATTTTTGATCCTGACAGCATTATCTCATCACCAACTGACATTCAACGCGAATTAGAAG
TTGTTGATGAATTAGTGCGTGCACATTCACGACAGACTTCGGATTATGAAGAATCAGCAT
CATCATCATGGTCTCCACGTAGTGAATATTCGAGTAGTGGATATTCACAATATGATGATG
AACCAGTTAAAAAATCAAAGTCTGGCTTGAAGGGCGTTACAAAGAAACGTACACGTGGCT
ATGGAAGAAATCCAGAAGAAAAGAAATCGCGTAAGAAGGAACAAAATAAGAATGCTGCTA
CTCGCTATCGTATGAAGAAGAAGCAAAAAGTTGAGGTCATTATGGACGAGGAGAAAATTT
TAATGGATAAGAACAAGAGATTGACAACAGCCTATAAAGATACAAAGCGCGAAGTTAAAT
ACCTGAAAAGCTTGTTGCGAGATCTTTTCAAAGCTCGCGGATTCATTTAATTGTATTTTT
TTTTCATTTATATATATATAAGCACTTCTTGCTTATTTTTTGAATATTTTTCTTTGTATT
TCATGGTACAAAATTTCTAAATTTTTTTTGTAAAATTATAAACAGTTTTACTCTTCAACA
AAAAATCATATTTTTAATCATTAGTGTTAAGTTGTATTCGATTATTTCTTTAACAACAAA
CAAATATTTACTTATAGAACCTCAGTGTGCACCCTAACAAAAAATAGATGCCATTAAAAG
TTTGTAGTACAAAAGCTCCCTTGATAGTGCAACTTTATTAGAGTAATTGATATTTATTTA
TGCCGACATAAGTAAACTTGTGTCTAAAGTTAAAATGTTAGTGAAATTGTAAAGTGTCAT
TATTGAGAATAACAAACTTATAATAAAATCTTGAATGGCAT
>g14005.t30 Gene=g14005 Length=52
MKKKQKVEVIMDEEKILMDKNKRLTTAYKDTKREVKYLKSLLRDLFKARGFI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g14005.t30 | Gene3D | G3DSA:1.20.5.170 | - | 1 | 45 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
