General information for g14010.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Cell division cycle 5-like protein.
Parent gene
- The parent gene g14010 is located on chr_1: 33979591..33981442 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14010 | g14010.t1 | TSS | g14010.t1 | 33976599 | 33976599 |
| chr_1 | g14010 | g14010.t1 | isoform | g14010.t1 | 33976727 | 33979591 |
| chr_1 | g14010 | g14010.t1 | exon | g14010.t1.exon1 | 33976727 | 33976771 |
| chr_1 | g14010 | g14010.t1 | cds | g14010.t1.CDS1 | 33976727 | 33976771 |
| chr_1 | g14010 | g14010.t1 | exon | g14010.t1.exon2 | 33977141 | 33979372 |
| chr_1 | g14010 | g14010.t1 | cds | g14010.t1.CDS2 | 33977141 | 33979372 |
| chr_1 | g14010 | g14010.t1 | exon | g14010.t1.exon3 | 33979430 | 33979591 |
| chr_1 | g14010 | g14010.t1 | cds | g14010.t1.CDS3 | 33979430 | 33979591 |
| chr_1 | g14010 | g14010.t1 | TTS | g14010.t1 | 33979686 | 33979686 |
Sequences
>g14010.t1 Gene=g14010 Length=2439
ATGCCGAGAATAATGATAAAGGGTGGTATATGGAGAAATACAGAGGATGAAATTCTCAAA
GCGGCTGTTATGAAATATGGAAAGAATCAATGGTCACGAATTGCATCATTGCTTCATAGG
AAAAGTGCCAAACAATGTAAAGCACGATGGTATGAATGGTTAGATCCATCAATTAAAAAG
ACTGAATGGTCTAGAGAGGAAGATGAGAAGTTATTGCATTTAGCAAAGCTAATGCCAACT
CAATGGCGTACTATAGCACCGATTATTGGAAGAACAGCAGCTCAATGTTTAGAACGATAT
GAATGTTTGCTGGATCAAGCACAACGAAAAGAAGAGGGTGAAGAGACTTTAGATGATCCG
AGAAAGTTAAAACCCGGTGAAATAGATCCGAATCCCGAAATCAAACCAGCAAGACCTGAT
CCTAAAGATATGGACGAAGATGAACTAGAAATGCTATCAGAAGCTCGTGCACGTCTTGCC
AATACTCAAGGCAAAAAAGCCAAACGTAAAGCTCGTGAGAAGCAATTAGAAGAAGCACGT
CGCTTGGCCGCTCTTCAAAAGCGTCGTGAATTGCGTGCCGCAGGTATTGGAGGTGGAAAT
CGTAAGAAAAAAATTAAAGGCATTGATTATAATGCTGAAATCCCATTTGAAAAACAACCA
GCAAGAGGATTTTATGATACAACAGATGAATTTGTTGTACCCATTGCTGCAGATTTTTCG
CGTTTACGTCAACAAAATCTTGATGGAGAATTGCGTTCTGAAAAAGAAGCACGTGAACGT
AAAAAGGATAAAGAGAAACTCAAGAAACGTGAAAATGAAATACCAATTAATATGTTGCAA
AATCAAGAGCCTGATAGAAAACGCTCAAAGTTAGTTCTACCAGAGCCTCAAATTTCTGAG
CAAGAGCTACAACAAGTTGTAAAATTGGGAAGAGCAAGTGAGATGGCCAAAGAGGTTGCA
TCTGAAAGTGGAATCGAAACAACTGATGCATTGTTAGCAGATTACAGCATTACTCCTCAA
ATTTCTGCGACTCCAAGAACACCAGCACCAGTAACAGATAGAATTATGCAAGAAGCACAA
AATATAATGGCATTGACTCATGTTGAGACTCCACTCAAAGGAGGAATGAATACACCTCTC
ACATCGGTAGATTTCAGTGGATCGTTACCTCAAAATCTTCAAATTGCAACCCCTAATACA
GTTATCGCCACGCCATTTAGAACATCTCGCGAGACAGGTAATACGCCAGCTTTTGCAACA
CCATCATCTTCTGTATTAGTTCCAACAAGTGGAAGTGTTCGCAGTGGAAATAATTTCACA
CCAGCTCATGTTCGTGACAAATTAAATATCAATCCAGAAGATTCAATGAATGTTACAGAA
ACACCAGCTGCATTTAAACATTTTCAACGTCAAACAAAATCAATTTTGCGAGAAGGTTTA
GCTTCATTACCAACACCAAAGAATGATTACGAAATTGTTGTACCAGATGAAGAACAAGAG
AATGAGCCAGAGACAGCTGAAATGACAATTGAAGATCAAGCTGATGTTGATGCTAAACGT
TTGGCTGATGAAAAAGAACGTAAGCGACAAGAAATGCTTTTAAGGTCGCAAGTTATTCAA
CGAGATCTTCCTAGACCACTTGAAATAAATTCGAGTATTCTTCGACCAACAAGTGAAATG
CAAGGTTTAACAGATTTGCAAAAGGCAGAAGAACTTATAAAACAAGAAATGATTACAATG
CTTCATTATGATGCATATAATGATCCTGTTGTTGGAAGTAACCAAGCACCACAAAAGAGA
CAACAACACATAAATTATCTTGAAACACATAAATACCATGAAGTTTCTCACGAAGAACTT
GCAAATGCTTCTAATATGTTAAAAAATGAAATGCAGATTGTTAAAAATGGAATGGCTCAT
GGAGATTTATCACTTGAAAGTTATTCACAGGTTTGGTTAGAATGTCTTAGTCAAGTTCTT
TATTTGCCATCACAAAATCGATATACGAGAGCGAGTCTTGCAAGTAAAAAAGACAGAATT
GAATCATGTGAGAAACGACTTGAGCAGAATAGAAAGGTCATGGCAAGAGAAGCAAAAAAG
TGTAGTAAATTAGAGAAAAAGCTTAAAACTTTACTTGGTGGCTATCAAGCTAGGGCACAT
TCATTGATGAAACAGCTTCAAGACACTTGTGAACAAATTGAACAAAATTATTTGTCATTA
TCCACTTTTGAGTTTTTGGAGAAATTAGAAACGGCTGCGATTCCTAAACGACTTGAGTCA
TTAACTGAAGATGTGTCAAGACAGACAGAAAGAGAAAAACAACTTCAACAACGATATGCA
GAACTGATGGAGCAATTAAGAGAATTGAATAAAACATCAAATGGGGAAGTTGAATCAAAT
CTTACTAATGGAAAAGAAACTGAAATTGAAAATAATTAA
>g14010.t1 Gene=g14010 Length=812
MPRIMIKGGIWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKK
TEWSREEDEKLLHLAKLMPTQWRTIAPIIGRTAAQCLERYECLLDQAQRKEEGEETLDDP
RKLKPGEIDPNPEIKPARPDPKDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEAR
RLAALQKRRELRAAGIGGGNRKKKIKGIDYNAEIPFEKQPARGFYDTTDEFVVPIAADFS
RLRQQNLDGELRSEKEARERKKDKEKLKKRENEIPINMLQNQEPDRKRSKLVLPEPQISE
QELQQVVKLGRASEMAKEVASESGIETTDALLADYSITPQISATPRTPAPVTDRIMQEAQ
NIMALTHVETPLKGGMNTPLTSVDFSGSLPQNLQIATPNTVIATPFRTSRETGNTPAFAT
PSSSVLVPTSGSVRSGNNFTPAHVRDKLNINPEDSMNVTETPAAFKHFQRQTKSILREGL
ASLPTPKNDYEIVVPDEEQENEPETAEMTIEDQADVDAKRLADEKERKRQEMLLRSQVIQ
RDLPRPLEINSSILRPTSEMQGLTDLQKAEELIKQEMITMLHYDAYNDPVVGSNQAPQKR
QQHINYLETHKYHEVSHEELANASNMLKNEMQIVKNGMAHGDLSLESYSQVWLECLSQVL
YLPSQNRYTRASLASKKDRIESCEKRLEQNRKVMAREAKKCSKLEKKLKTLLGGYQARAH
SLMKQLQDTCEQIEQNYLSLSTFEFLEKLETAAIPKRLESLTEDVSRQTEREKQLQQRYA
ELMEQLRELNKTSNGEVESNLTNGKETEIENN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 14 | g14010.t1 | CDD | cd00167 | SANT | 11 | 54 | 1.13192E-12 |
| 15 | g14010.t1 | CDD | cd11659 | SANT_CDC5_II | 56 | 108 | 1.10019E-30 |
| 10 | g14010.t1 | Coils | Coil | Coil | 97 | 117 | - |
| 7 | g14010.t1 | Coils | Coil | Coil | 168 | 189 | - |
| 11 | g14010.t1 | Coils | Coil | Coil | 253 | 273 | - |
| 13 | g14010.t1 | Coils | Coil | Coil | 511 | 531 | - |
| 12 | g14010.t1 | Coils | Coil | Coil | 673 | 693 | - |
| 8 | g14010.t1 | Coils | Coil | Coil | 716 | 736 | - |
| 9 | g14010.t1 | Coils | Coil | Coil | 758 | 792 | - |
| 6 | g14010.t1 | Gene3D | G3DSA:1.10.10.60 | - | 8 | 58 | 3.7E-16 |
| 5 | g14010.t1 | Gene3D | G3DSA:1.10.10.60 | - | 59 | 116 | 9.4E-10 |
| 18 | g14010.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 110 | 146 | - |
| 19 | g14010.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 250 | 271 | - |
| 20 | g14010.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 789 | 812 | - |
| 3 | g14010.t1 | PANTHER | PTHR45885 | CELL DIVISION CYCLE 5-LIKE PROTEIN | 1 | 787 | 0.0 |
| 1 | g14010.t1 | Pfam | PF13921 | Myb-like DNA-binding domain | 11 | 71 | 7.3E-14 |
| 2 | g14010.t1 | Pfam | PF11831 | pre-mRNA splicing factor component | 397 | 646 | 7.5E-75 |
| 22 | g14010.t1 | ProSiteProfiles | PS51294 | Myb-type HTH DNA-binding domain profile. | 1 | 58 | 21.041 |
| 21 | g14010.t1 | ProSiteProfiles | PS51294 | Myb-type HTH DNA-binding domain profile. | 59 | 108 | 14.368 |
| 17 | g14010.t1 | SMART | SM00717 | sant | 7 | 56 | 2.9E-14 |
| 16 | g14010.t1 | SMART | SM00717 | sant | 59 | 106 | 2.5E-11 |
| 4 | g14010.t1 | SUPERFAMILY | SSF46689 | Homeodomain-like | 34 | 114 | 5.03E-21 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K12860 (pre-mRNA-splicing factor CDC5/CEF1)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
