General information for g14010.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Cell division cycle 5-like protein.
Parent gene
- The parent gene g14010 is located on chr_1: 33979591..33981442 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14010 | g14010.t2 | isoform | g14010.t2 | 33977887 | 33979707 |
| chr_1 | g14010 | g14010.t2 | exon | g14010.t2.exon1 | 33977887 | 33979707 |
| chr_1 | g14010 | g14010.t2 | cds | g14010.t2.CDS1 | 33977927 | 33979429 |
| chr_1 | g14010 | g14010.t2 | TTS | g14010.t2 | 33979686 | 33979686 |
| chr_1 | g14010 | g14010.t2 | TSS | g14010.t2 | NA | NA |
Sequences
>g14010.t2 Gene=g14010 Length=1821
AGAGAAACTCAAGAAACGTGAAAATGAAATACCAATTAATATGTTGCAAAATCAAGAGCC
TGATAGAAAACGCTCAAAGTTAGTTCTACCAGAGCCTCAAATTTCTGAGCAAGAGCTACA
ACAAGTTGTAAAATTGGGAAGAGCAAGTGAGATGGCCAAAGAGGTTGCATCTGAAAGTGG
AATCGAAACAACTGATGCATTGTTAGCAGATTACAGCATTACTCCTCAAATTTCTGCGAC
TCCAAGAACACCAGCACCAGTAACAGATAGAATTATGCAAGAAGCACAAAATATAATGGC
ATTGACTCATGTTGAGACTCCACTCAAAGGAGGAATGAATACACCTCTCACATCGGTAGA
TTTCAGTGGATCGTTACCTCAAAATCTTCAAATTGCAACCCCTAATACAGTTATCGCCAC
GCCATTTAGAACATCTCGCGAGACAGGTAATACGCCAGCTTTTGCAACACCATCATCTTC
TGTATTAGTTCCAACAAGTGGAAGTGTTCGCAGTGGAAATAATTTCACACCAGCTCATGT
TCGTGACAAATTAAATATCAATCCAGAAGATTCAATGAATGTTACAGAAACACCAGCTGC
ATTTAAACATTTTCAACGTCAAACAAAATCAATTTTGCGAGAAGGTTTAGCTTCATTACC
AACACCAAAGAATGATTACGAAATTGTTGTACCAGATGAAGAACAAGAGAATGAGCCAGA
GACAGCTGAAATGACAATTGAAGATCAAGCTGATGTTGATGCTAAACGTTTGGCTGATGA
AAAAGAACGTAAGCGACAAGAAATGCTTTTAAGGTCGCAAGTTATTCAACGAGATCTTCC
TAGACCACTTGAAATAAATTCGAGTATTCTTCGACCAACAAGTGAAATGCAAGGTTTAAC
AGATTTGCAAAAGGCAGAAGAACTTATAAAACAAGAAATGATTACAATGCTTCATTATGA
TGCATATAATGATCCTGTTGTTGGAAGTAACCAAGCACCACAAAAGAGACAACAACACAT
AAATTATCTTGAAACACATAAATACCATGAAGTTTCTCACGAAGAACTTGCAAATGCTTC
TAATATGTTAAAAAATGAAATGCAGATTGTTAAAAATGGAATGGCTCATGGAGATTTATC
ACTTGAAAGTTATTCACAGGTTTGGTTAGAATGTCTTAGTCAAGTTCTTTATTTGCCATC
ACAAAATCGATATACGAGAGCGAGTCTTGCAAGTAAAAAAGACAGAATTGAATCATGTGA
GAAACGACTTGAGCAGAATAGAAAGGTCATGGCAAGAGAAGCAAAAAAGTGTAGTAAATT
AGAGAAAAAGCTTAAAACTTTACTTGGTGGCTATCAAGCTAGGGCACATTCATTGATGAA
ACAGCTTCAAGACACTTGTGAACAAATTGAACAAAATTATTTGTCATTATCCACTTTTGA
GTTTTTGGAGAAATTAGAAACGGCTGCGATTCCTAAACGACTTGAGGTAAAAATTACTTT
TGTTTTAAATATAATCAAATTTTTAACAATTTATAAATTTTAGTCATTAACTGAAGATGT
GTCAAGACAGACAGAAAGAGAAAAACAACTTCAACAACGATATGCAGAACTGATGGAGCA
ATTAAGAGAATTGAATAAAACATCAAATGGGGAAGTTGAATCAAATCTTACTAATGGAAA
AGAAACTGAAATTGAAAATAATTAAATGACGACATATGAATAATAATAATTCAATATTTT
ATTGGAAATAATTTTTAAAATAACGAAAATAATAAAACTTAAAACTATTGGAAGATTACT
AAAACAATTGTTCATTTTGAC
>g14010.t2 Gene=g14010 Length=500
MLQNQEPDRKRSKLVLPEPQISEQELQQVVKLGRASEMAKEVASESGIETTDALLADYSI
TPQISATPRTPAPVTDRIMQEAQNIMALTHVETPLKGGMNTPLTSVDFSGSLPQNLQIAT
PNTVIATPFRTSRETGNTPAFATPSSSVLVPTSGSVRSGNNFTPAHVRDKLNINPEDSMN
VTETPAAFKHFQRQTKSILREGLASLPTPKNDYEIVVPDEEQENEPETAEMTIEDQADVD
AKRLADEKERKRQEMLLRSQVIQRDLPRPLEINSSILRPTSEMQGLTDLQKAEELIKQEM
ITMLHYDAYNDPVVGSNQAPQKRQQHINYLETHKYHEVSHEELANASNMLKNEMQIVKNG
MAHGDLSLESYSQVWLECLSQVLYLPSQNRYTRASLASKKDRIESCEKRLEQNRKVMARE
AKKCSKLEKKLKTLLGGYQARAHSLMKQLQDTCEQIEQNYLSLSTFEFLEKLETAAIPKR
LEVKITFVLNIIKFLTIYKF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g14010.t2 | Coils | Coil | Coil | 234 | 254 | - |
| 5 | g14010.t2 | Coils | Coil | Coil | 396 | 416 | - |
| 6 | g14010.t2 | Coils | Coil | Coil | 439 | 459 | - |
| 3 | g14010.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - |
| 4 | g14010.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - |
| 2 | g14010.t2 | PANTHER | PTHR45885 | CELL DIVISION CYCLE 5-LIKE PROTEIN | 2 | 482 | 1.4E-141 |
| 1 | g14010.t2 | Pfam | PF11831 | pre-mRNA splicing factor component | 120 | 369 | 2.6E-75 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
