General information for g14010.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Cell division cycle 5-like protein.
Parent gene
- The parent gene g14010 is located on chr_1: 33979591..33981442 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14010 | g14010.t3 | isoform | g14010.t3 | 33978566 | 33979591 |
| chr_1 | g14010 | g14010.t3 | exon | g14010.t3.exon1 | 33978566 | 33979372 |
| chr_1 | g14010 | g14010.t3 | cds | g14010.t3.CDS1 | 33978617 | 33979372 |
| chr_1 | g14010 | g14010.t3 | exon | g14010.t3.exon2 | 33979430 | 33979591 |
| chr_1 | g14010 | g14010.t3 | cds | g14010.t3.CDS2 | 33979430 | 33979591 |
| chr_1 | g14010 | g14010.t3 | TTS | g14010.t3 | 33979686 | 33979686 |
| chr_1 | g14010 | g14010.t3 | TSS | g14010.t3 | NA | NA |
Sequences
>g14010.t3 Gene=g14010 Length=969
GAAATTGTTGTACCAGATGAAGAACAAGAGAATGAGCCAGAGACAGCTGAAATGACAATT
GAAGATCAAGCTGATGTTGATGCTAAACGTTTGGCTGATGAAAAAGAACGTAAGCGACAA
GAAATGCTTTTAAGGTCGCAAGTTATTCAACGAGATCTTCCTAGACCACTTGAAATAAAT
TCGAGTATTCTTCGACCAACAAGTGAAATGCAAGGTTTAACAGATTTGCAAAAGGCAGAA
GAACTTATAAAACAAGAAATGATTACAATGCTTCATTATGATGCATATAATGATCCTGTT
GTTGGAAGTAACCAAGCACCACAAAAGAGACAACAACACATAAATTATCTTGAAACACAT
AAATACCATGAAGTTTCTCACGAAGAACTTGCAAATGCTTCTAATATGTTAAAAAATGAA
ATGCAGATTGTTAAAAATGGAATGGCTCATGGAGATTTATCACTTGAAAGTTATTCACAG
GTTTGGTTAGAATGTCTTAGTCAAGTTCTTTATTTGCCATCACAAAATCGATATACGAGA
GCGAGTCTTGCAAGTAAAAAAGACAGAATTGAATCATGTGAGAAACGACTTGAGCAGAAT
AGAAAGGTCATGGCAAGAGAAGCAAAAAAGTGTAGTAAATTAGAGAAAAAGCTTAAAACT
TTACTTGGTGGCTATCAAGCTAGGGCACATTCATTGATGAAACAGCTTCAAGACACTTGT
GAACAAATTGAACAAAATTATTTGTCATTATCCACTTTTGAGTTTTTGGAGAAATTAGAA
ACGGCTGCGATTCCTAAACGACTTGAGTCATTAACTGAAGATGTGTCAAGACAGACAGAA
AGAGAAAAACAACTTCAACAACGATATGCAGAACTGATGGAGCAATTAAGAGAATTGAAT
AAAACATCAAATGGGGAAGTTGAATCAAATCTTACTAATGGAAAAGAAACTGAAATTGAA
AATAATTAA
>g14010.t3 Gene=g14010 Length=305
MTIEDQADVDAKRLADEKERKRQEMLLRSQVIQRDLPRPLEINSSILRPTSEMQGLTDLQ
KAEELIKQEMITMLHYDAYNDPVVGSNQAPQKRQQHINYLETHKYHEVSHEELANASNML
KNEMQIVKNGMAHGDLSLESYSQVWLECLSQVLYLPSQNRYTRASLASKKDRIESCEKRL
EQNRKVMAREAKKCSKLEKKLKTLLGGYQARAHSLMKQLQDTCEQIEQNYLSLSTFEFLE
KLETAAIPKRLESLTEDVSRQTEREKQLQQRYAELMEQLRELNKTSNGEVESNLTNGKET
EIENN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g14010.t3 | Coils | Coil | Coil | 4 | 24 | - |
| 7 | g14010.t3 | Coils | Coil | Coil | 166 | 186 | - |
| 5 | g14010.t3 | Coils | Coil | Coil | 209 | 229 | - |
| 6 | g14010.t3 | Coils | Coil | Coil | 251 | 285 | - |
| 3 | g14010.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 281 | 305 | - |
| 2 | g14010.t3 | PANTHER | PTHR45885 | CELL DIVISION CYCLE 5-LIKE PROTEIN | 3 | 280 | 3.0E-80 |
| 1 | g14010.t3 | Pfam | PF11831 | pre-mRNA splicing factor component | 2 | 139 | 5.6E-40 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
