General information for g14012.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g14012 is located on chr_1: 33984316..33985212 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14012 | g14012.t5 | isoform | g14012.t5 | 33983828 | 33985212 |
| chr_1 | g14012 | g14012.t5 | exon | g14012.t5.exon1 | 33983828 | 33984077 |
| chr_1 | g14012 | g14012.t5 | cds | g14012.t5.CDS1 | 33983858 | 33984077 |
| chr_1 | g14012 | g14012.t5 | exon | g14012.t5.exon2 | 33984141 | 33985212 |
| chr_1 | g14012 | g14012.t5 | cds | g14012.t5.CDS2 | 33984141 | 33984316 |
| chr_1 | g14012 | g14012.t5 | TSS | g14012.t5 | NA | NA |
| chr_1 | g14012 | g14012.t5 | TTS | g14012.t5 | NA | NA |
Sequences
>g14012.t5 Gene=g14012 Length=1322
GGTTCACCTGGAAATCGTACTCCCGTTGGTATGACCAAGAGCAGTCAAAATGCATCACCG
ACTCCATCGGCAACACAAACCTGGACTATGCGTCAGCAGCAACAACAACCACCACCTGAG
AGTTATCAGTATAATCAATTGAGCCCTTCACGATCGCCGAGTGGTCCAACTTATACGCAG
CTTAGTAGTGGAATTCAATCTCGGCCGGCTTATAATGCCACAACTACAACACAACAAGCT
CCACAACCTGGATATTATGGATGGCCTCATGCAGAAGGAAGTGCTCCTCATCCTTCAGTA
CCTACTGGTCAACATCCACAACAAGGACAAGAATTGTCGGATATGCTTCAAATGCTTGGT
GATCAATCGGGTCCAGCAACATTCGAAGATCTCAACATTCATATGTTTTCCGGACAGTTT
GAGTGAATCTCAAACAATTAAACACATAATTACCAAAAGATCTGAAGACATGCTGAGCAT
TGCTTTCTTTTTTTAAAAAACCCAATTTTATTATAAAAGATGACGATTTTTCATATTTCC
AATTAGTAAAGTATTTTTGCAATCTTTTCGACTTTTTTCATTGATGAATTGAGCAACGAT
AAATTGAAAACATTTTTTTATTACATTTAAATCTTAAGGAGATAATACATTTAGATAAAA
AAATGTGCAAAATATGGCATTTGCTAATATATAATAAAGAATTTTTTGTCAATATAAAAT
TCGATAAAGATAAGAAAAGAGACAGAAATAATATCTATATTAAATGATTTATTAGAATTT
AAGTAATGAAAAAGAGTTTATTCATGATATTTCTACATAACTTACAACGTATATGAACTA
ACATTTTGCAGTTAAGGGCTAAATTAAGAAATTATGATACTGATCATTTTCTTCTTCTTT
TTCAATAGCATAATTAAATGAATTCCATTTTTGATGAAAAAAAAGTAAAATTTAAATCAT
AAAAATTTACCATAATTTTAATATATGAGTGGCATAAAATTCTTACATTGACGCTTTTTT
AAAAGCTAAAAATTCAATCGCGAAACACTTCCAGACGAAAAAATCTTTTGCACAAAATTT
AAATTTACTCTCTCTTCGAGAATAATTTACTTTTTATATACGAAAGTTTATCTTAGTTCC
ATTGATACATCAATTAGCGAAAATTTTATGCAATATTAGTTTGCTCCCTTGTAAGTTTAA
GTAAATCTTTATTTTCTAAATTTAAGGATTTTTTCTCAAAATAAAGAAAAATTTCAAGAA
ATGACAGTAGTATTTTAATTTTTATAAATTTTTTATTAAAAAAAACTAAACAATTTACTT
TC
>g14012.t5 Gene=g14012 Length=131
MTKSSQNASPTPSATQTWTMRQQQQQPPPESYQYNQLSPSRSPSGPTYTQLSSGIQSRPA
YNATTTTQQAPQPGYYGWPHAEGSAPHPSVPTGQHPQQGQELSDMLQMLGDQSGPATFED
LNIHMFSGQFE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g14012.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 101 | - |
| g14012.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 73 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
