General information for g14017.t11
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Branched-chain-amino-acid aminotransferase.
Parent gene
- The parent gene g14017 is located on chr_1: 34092319..34093211 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14017 | g14017.t11 | isoform | g14017.t11 | 34091780 | 34093211 |
| chr_1 | g14017 | g14017.t11 | exon | g14017.t11.exon1 | 34091780 | 34092003 |
| chr_1 | g14017 | g14017.t11 | cds | g14017.t11.CDS1 | 34091853 | 34092003 |
| chr_1 | g14017 | g14017.t11 | exon | g14017.t11.exon2 | 34092066 | 34092220 |
| chr_1 | g14017 | g14017.t11 | cds | g14017.t11.CDS2 | 34092066 | 34092220 |
| chr_1 | g14017 | g14017.t11 | exon | g14017.t11.exon3 | 34092314 | 34093211 |
| chr_1 | g14017 | g14017.t11 | cds | g14017.t11.CDS3 | 34092314 | 34092502 |
| chr_1 | g14017 | g14017.t11 | TTS | g14017.t11 | 34093207 | 34093207 |
| chr_1 | g14017 | g14017.t11 | TSS | g14017.t11 | NA | NA |
Sequences
>g14017.t11 Gene=g14017 Length=1277
ATCAACTGGTGTTTCTTTATTAGCAGATCCTCAATATACGAGATCATGGCCGGGTGGAGT
TGGTGATAGAAAAATGGGCTCAAACTATGCACCAACTATTCATGTGCAAAAAGAAGCTTC
TAAACAAGGTTTTCAACAAGTATTGTGGTTATATGGTGATGATCATCAACTAACAGAAGT
TGGTACAATGAACATTTTTGTTCTATTAATTAATGATCGTGGAGAACGTGAACTTGTTAC
ACCACCATTAAATGGTTTAATTTTACCTGGAATTGTTCGTCACTCAATTCTCAATCTTGC
TCGCGAATGGAATCAAGTTAAAGTGACTGAACGTAAAATCACAATGGCTGAAGTTAAGAA
ACTAGTCTATGAAAATAGAGTTCTCGAAATGTTTGGTGCTGGAACAGCATGTGTTGTATC
ACCTATCGAAAGAATCTTTTACATGAACGAGAATTTGCTCATTCCAACGATGGAGAATAG
TGATGCAGTATGGCGTACAATGCGCAATACCCTTCTCGACATTCAATATGGTCGAGTTAA
GCATCCTTGGGCAATAGAAATTGATTAATGTCCTCATGCGAATATAATTCTATTATCGAA
TATACACACATGCCTGTAAAAAATATCTATAATTGCCAAAATAGGATTAAGGATAATTTT
TATAATATAATTACTTGTTTCTGATTAAAATATTGTTATGGCTATAATAATTGAATCATA
TCATAATTATATCAATGTTTTTATTTCATATTTTTAAGTACAAAGCAAGCTAGAGACTGC
AGTCAATTGCAACTACTTCACATGCATTAAATTGAGAGTGAAGAGAATATCATGGCAAAA
GTATATGATCATAGTTACATACAGTCAAAGGTCCGATTGCAACATAAATACGCATTAATA
CTTTGCGTACTTTGTTTCTAACAAATCCGGTTTTATGTGTACATGCACATTAAAAATGTT
GTTCAATGATAATACTTAAGAAATGGTCAGATATGCACGCACAAATGAAAAATATCTTGT
CAAAACTGCCTAAAAATTTTCGTTTGTTCAATCTGACTCATTTAAAAAATATTCATTTTC
TCATAATATGAGAGAACAGAAACTGTATCATTGTCTTTGATATATTCTCATTCATTTATT
TTTAAATTTTCATGAAAGTATAGAATGTTTATTAAATAGCTTTAAGGCACTTTTTTCCTC
CTTAAAATGCCTAAAAAATGGATAAAAGATAAATATATATGCACACACATGCATACTTTA
ATTGTTATTTAAGAAAA
>g14017.t11 Gene=g14017 Length=164
MGSNYAPTIHVQKEASKQGFQQVLWLYGDDHQLTEVGTMNIFVLLINDRGERELVTPPLN
GLILPGIVRHSILNLAREWNQVKVTERKITMAEVKKLVYENRVLEMFGAGTACVVSPIER
IFYMNENLLIPTMENSDAVWRTMRNTLLDIQYGRVKHPWAIEID
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g14017.t11 | Gene3D | G3DSA:3.20.10.10 | - | 1 | 151 | 6.6E-53 |
| 2 | g14017.t11 | PANTHER | PTHR11825 | SUBGROUP IIII AMINOTRANSFERASE | 1 | 163 | 8.9E-66 |
| 1 | g14017.t11 | Pfam | PF01063 | Amino-transferase class IV | 3 | 121 | 2.4E-20 |
| 4 | g14017.t11 | ProSitePatterns | PS00770 | Aminotransferases class-IV signature. | 35 | 69 | - |
| 3 | g14017.t11 | SUPERFAMILY | SSF56752 | D-aminoacid aminotransferase-like PLP-dependent enzymes | 2 | 160 | 6.28E-48 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003824 | catalytic activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
