Gene loci information

Transcript annotation

  • This transcript has been annotated as GTP:AMP phosphotransferase AK3, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g14018 g14018.t1 TTS g14018.t1 34093640 34093640
chr_1 g14018 g14018.t1 isoform g14018.t1 34093892 34094836
chr_1 g14018 g14018.t1 exon g14018.t1.exon1 34093892 34094187
chr_1 g14018 g14018.t1 cds g14018.t1.CDS1 34093892 34094187
chr_1 g14018 g14018.t1 exon g14018.t1.exon2 34094260 34094569
chr_1 g14018 g14018.t1 cds g14018.t1.CDS2 34094260 34094569
chr_1 g14018 g14018.t1 exon g14018.t1.exon3 34094657 34094670
chr_1 g14018 g14018.t1 cds g14018.t1.CDS3 34094657 34094670
chr_1 g14018 g14018.t1 exon g14018.t1.exon4 34094806 34094836
chr_1 g14018 g14018.t1 cds g14018.t1.CDS4 34094806 34094836
chr_1 g14018 g14018.t1 TSS g14018.t1 34094956 34094956

Sequences

>g14018.t1 Gene=g14018 Length=651
ATGTCAAAGTTATTTCGTGCATTAATAATGGGTGCTCCAGGAGCTGGAAAAGGAACGATA
GCATCAAGAATATTAAAAAATTTTAATATTACACATCTCAGTACAGGAGATGTACTTAGG
AATAATATTGAAAAACTCACACCATTAGGAATTGAGGCGGAAACTTATATAAGAAAAGGT
GCTTTAGTGCCAGATGACAGCATGATCAAATGTATCTTAGAAGAAATGAAAGACATCAAT
GGATCATTTCTTCTTGATGGTTTTCCAAGAACAAAAACACAAGCTGAAAAACTTTGGGAA
GTGCAAAAAATTGACTCTGTTATCAATTTAGTCGTGCCATATGAAATTATTATCGATCGT
GTGAAGCTTCGATATGTCCACATGCCAAGTGGAAGAGTTTATAATCTCGACTATAATCCG
CCAAAAGAACCTATGAAAGACGATGTAACGGGAGAACCACTTACTAAAAGAGAAGATGAC
GATCCAGATATTCTATTGAAACGTTTAAAAGTTTATGATGATCAAACAATTCCAGTGTTG
GAATTTTACAAATCAAAGGGAATTTTGAATGAATTTAAAGGCAACACATCAGATGAAATT
TGGGCAAAATTGCAACCATTCTTGAATGCTGAAATCAATGGAAAAAATTAA

>g14018.t1 Gene=g14018 Length=216
MSKLFRALIMGAPGAGKGTIASRILKNFNITHLSTGDVLRNNIEKLTPLGIEAETYIRKG
ALVPDDSMIKCILEEMKDINGSFLLDGFPRTKTQAEKLWEVQKIDSVINLVVPYEIIIDR
VKLRYVHMPSGRVYNLDYNPPKEPMKDDVTGEPLTKREDDDPDILLKRLKVYDDQTIPVL
EFYKSKGILNEFKGNTSDEIWAKLQPFLNAEINGKN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g14018.t1 CDD cd01428 ADK 6 200 2.30787E-75
14 g14018.t1 Gene3D G3DSA:3.40.50.300 - 2 216 3.9E-71
5 g14018.t1 Hamap MF_03169 GTP:AMP phosphotransferase AK3, mitochondrial [AK3]. 1 213 42.005337
6 g14018.t1 Hamap MF_00235 Adenylate kinase [adk]. 5 209 40.276405
3 g14018.t1 PANTHER PTHR23359 NUCLEOTIDE KINASE 5 213 4.6E-69
4 g14018.t1 PANTHER PTHR23359:SF68 GTP:AMP PHOSPHOTRANSFERASE AK3, MITOCHONDRIAL 5 213 4.6E-69
10 g14018.t1 PRINTS PR00094 Adenylate kinase signature 8 21 4.2E-29
8 g14018.t1 PRINTS PR00094 Adenylate kinase signature 36 50 4.2E-29
7 g14018.t1 PRINTS PR00094 Adenylate kinase signature 83 99 4.2E-29
9 g14018.t1 PRINTS PR00094 Adenylate kinase signature 157 172 4.2E-29
11 g14018.t1 PRINTS PR00094 Adenylate kinase signature 174 188 4.2E-29
2 g14018.t1 Pfam PF00406 Adenylate kinase 9 187 1.5E-42
1 g14018.t1 Pfam PF05191 Adenylate kinase, active site lid 124 159 3.2E-14
16 g14018.t1 ProSitePatterns PS00113 Adenylate kinase signature. 83 94 -
12 g14018.t1 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 2 210 4.47E-33
13 g14018.t1 SUPERFAMILY SSF57774 Microbial and mitochondrial ADK, insert zinc finger domain 124 160 3.27E-10
17 g14018.t1 TIGRFAM TIGR01351 adk: adenylate kinase 7 208 1.9E-64

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0016776 phosphotransferase activity, phosphate group as acceptor MF
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0005739 mitochondrion CC
GO:0004017 adenylate kinase activity MF
GO:0019205 nucleobase-containing compound kinase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values