Gene loci information

Transcript annotation

  • This transcript has been annotated as GTP:AMP phosphotransferase AK3, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g14018 g14018.t13 TTS g14018.t13 34093640 34093640
chr_1 g14018 g14018.t13 isoform g14018.t13 34093892 34094836
chr_1 g14018 g14018.t13 exon g14018.t13.exon1 34093892 34094187
chr_1 g14018 g14018.t13 cds g14018.t13.CDS1 34093892 34094187
chr_1 g14018 g14018.t13 exon g14018.t13.exon2 34094260 34094580
chr_1 g14018 g14018.t13 cds g14018.t13.CDS2 34094260 34094580
chr_1 g14018 g14018.t13 exon g14018.t13.exon3 34094806 34094836
chr_1 g14018 g14018.t13 cds g14018.t13.CDS3 34094806 34094836
chr_1 g14018 g14018.t13 TSS g14018.t13 34094956 34094956

Sequences

>g14018.t13 Gene=g14018 Length=648
ATGTCAAAGTTATTTCGTGCATTAATAATGGAAATTTTTCAGGGAAAAGGAACGATAGCA
TCAAGAATATTAAAAAATTTTAATATTACACATCTCAGTACAGGAGATGTACTTAGGAAT
AATATTGAAAAACTCACACCATTAGGAATTGAGGCGGAAACTTATATAAGAAAAGGTGCT
TTAGTGCCAGATGACAGCATGATCAAATGTATCTTAGAAGAAATGAAAGACATCAATGGA
TCATTTCTTCTTGATGGTTTTCCAAGAACAAAAACACAAGCTGAAAAACTTTGGGAAGTG
CAAAAAATTGACTCTGTTATCAATTTAGTCGTGCCATATGAAATTATTATCGATCGTGTG
AAGCTTCGATATGTCCACATGCCAAGTGGAAGAGTTTATAATCTCGACTATAATCCGCCA
AAAGAACCTATGAAAGACGATGTAACGGGAGAACCACTTACTAAAAGAGAAGATGACGAT
CCAGATATTCTATTGAAACGTTTAAAAGTTTATGATGATCAAACAATTCCAGTGTTGGAA
TTTTACAAATCAAAGGGAATTTTGAATGAATTTAAAGGCAACACATCAGATGAAATTTGG
GCAAAATTGCAACCATTCTTGAATGCTGAAATCAATGGAAAAAATTAA

>g14018.t13 Gene=g14018 Length=215
MSKLFRALIMEIFQGKGTIASRILKNFNITHLSTGDVLRNNIEKLTPLGIEAETYIRKGA
LVPDDSMIKCILEEMKDINGSFLLDGFPRTKTQAEKLWEVQKIDSVINLVVPYEIIIDRV
KLRYVHMPSGRVYNLDYNPPKEPMKDDVTGEPLTKREDDDPDILLKRLKVYDDQTIPVLE
FYKSKGILNEFKGNTSDEIWAKLQPFLNAEINGKN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g14018.t13 CDD cd01428 ADK 15 196 7.55122E-68
13 g14018.t13 Gene3D G3DSA:3.40.50.300 - 12 215 2.3E-65
5 g14018.t13 Hamap MF_03169 GTP:AMP phosphotransferase AK3, mitochondrial [AK3]. 1 212 38.915768
6 g14018.t13 Hamap MF_00235 Adenylate kinase [adk]. 15 208 37.115227
3 g14018.t13 PANTHER PTHR23359 NUCLEOTIDE KINASE 14 212 4.9E-64
4 g14018.t13 PANTHER PTHR23359:SF68 GTP:AMP PHOSPHOTRANSFERASE AK3, MITOCHONDRIAL 14 212 4.9E-64
7 g14018.t13 PRINTS PR00094 Adenylate kinase signature 7 20 4.5E-22
9 g14018.t13 PRINTS PR00094 Adenylate kinase signature 35 49 4.5E-22
8 g14018.t13 PRINTS PR00094 Adenylate kinase signature 82 98 4.5E-22
11 g14018.t13 PRINTS PR00094 Adenylate kinase signature 156 171 4.5E-22
10 g14018.t13 PRINTS PR00094 Adenylate kinase signature 173 187 4.5E-22
2 g14018.t13 Pfam PF00406 Adenylate kinase 15 186 7.7E-38
1 g14018.t13 Pfam PF05191 Adenylate kinase, active site lid 123 158 3.2E-14
15 g14018.t13 ProSitePatterns PS00113 Adenylate kinase signature. 82 93 -
12 g14018.t13 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 15 209 1.74E-27
16 g14018.t13 TIGRFAM TIGR01351 adk: adenylate kinase 15 207 1.5E-58

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0016776 phosphotransferase activity, phosphate group as acceptor MF
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0005739 mitochondrion CC
GO:0004017 adenylate kinase activity MF
GO:0019205 nucleobase-containing compound kinase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed