Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Acyl-CoA Delta(11) desaturase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1402 g1402.t14 TTS g1402.t14 10653242 10653242
chr_3 g1402 g1402.t14 isoform g1402.t14 10653457 10654191
chr_3 g1402 g1402.t14 exon g1402.t14.exon1 10653457 10653773
chr_3 g1402 g1402.t14 cds g1402.t14.CDS1 10653457 10653773
chr_3 g1402 g1402.t14 exon g1402.t14.exon2 10653838 10653890
chr_3 g1402 g1402.t14 cds g1402.t14.CDS2 10653838 10653890
chr_3 g1402 g1402.t14 exon g1402.t14.exon3 10653950 10654132
chr_3 g1402 g1402.t14 cds g1402.t14.CDS3 10653950 10654038
chr_3 g1402 g1402.t14 exon g1402.t14.exon4 10654185 10654191
chr_3 g1402 g1402.t14 TSS g1402.t14 NA NA

Sequences

>g1402.t14 Gene=g1402 Length=560
AACATAAATATTATGTTTGGCTAGTGCTTCTTATTTCACTCTCAATTCCAATTTTTATAT
CAACTTATATTTTTGGTGATACATTTTCGGCTGCTTATCATATGAACATTTTTAGAATTG
TCTTAGCATGGCATATAACTTGGAGTATAAATTCTGTTTCACATATTTGGGGAAATCGAC
CCTTTGAAAAAGATATTTTGCCAACTGATACTTTCATAATTGGTTTTCTTGCTTTTGGAG
AAGGATGGCATAATTTTCATCATGTTTATCCGTGGGACTATAAAGTTTCTGAATTGCCCA
ATTATTATTGCAATTTTACAATTCCATTTATTGATTTCTTCGCATGGCTTGGTTGGGCGA
CAGATTTAAAAATGGCATCAGATGAGATGATCAGAAAAAGAATAATGAAAAGTGGTGATG
GAACTCATAGATATTCAATAGAGGAAGCAAAAAAGAAAAAGACAGCTAAAGAATTGTTAG
ATTTATTCAATAACAAAGTCTTACAAAAAAGCAATCCACATGAACTTGAAGGCGATTTTG
CTGACACATATTGGGGATAT

>g1402.t14 Gene=g1402 Length=153
MNIFRIVLAWHITWSINSVSHIWGNRPFEKDILPTDTFIIGFLAFGEGWHNFHHVYPWDY
KVSELPNYYCNFTIPFIDFFAWLGWATDLKMASDEMIRKRIMKSGDGTHRYSIEEAKKKK
TAKELLDLFNNKVLQKSNPHELEGDFADTYWGY

Protein features from InterProScan

Transcript Database ID Name Start End E.value
g1402.t14 PANTHER PTHR11351 ACYL-COA DESATURASE 2 121 3.1E-39
g1402.t14 PANTHER PTHR11351:SF31 RE43130P 2 121 3.1E-39
g1402.t14 PRINTS PR00075 Fatty acid desaturase family 1 signature 3 24 8.4E-12
g1402.t14 PRINTS PR00075 Fatty acid desaturase family 1 signature 46 60 8.4E-12
g1402.t14 SignalP_EUK SignalP-noTM SignalP-noTM 1 18 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0055114 NA NA
GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed