General information for g14020.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative GTP:AMP phosphotransferase AK3, mitochondrial.
Parent gene
- The parent gene g14020 is located on chr_1: 34096648..34097600 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14020 | g14020.t3 | TTS | g14020.t3 | 34096509 | 34096509 |
| chr_1 | g14020 | g14020.t3 | isoform | g14020.t3 | 34096648 | 34097600 |
| chr_1 | g14020 | g14020.t3 | exon | g14020.t3.exon1 | 34096648 | 34096874 |
| chr_1 | g14020 | g14020.t3 | cds | g14020.t3.CDS1 | 34096648 | 34096874 |
| chr_1 | g14020 | g14020.t3 | exon | g14020.t3.exon2 | 34096979 | 34097035 |
| chr_1 | g14020 | g14020.t3 | cds | g14020.t3.CDS2 | 34096979 | 34097035 |
| chr_1 | g14020 | g14020.t3 | exon | g14020.t3.exon3 | 34097097 | 34097600 |
| chr_1 | g14020 | g14020.t3 | cds | g14020.t3.CDS3 | 34097097 | 34097250 |
| chr_1 | g14020 | g14020.t3 | TSS | g14020.t3 | 34097632 | 34097632 |
Sequences
>g14020.t3 Gene=g14020 Length=788
ATGTCAAAATTATTTCGAGCAGTTCTATTAGGTAAAATTTAAAAATAAATAAATATTTTT
TGATACTTTTAATACTTTTTAATTATTTTATTCTTATTAGGAGCTCCAGGAGCTGTAAGC
ATTAAATTTTCACAATTTTACAACTTTTTATGTGAAATTTTTTTTTGGAATATTCCATTC
GTGTTTTCTTTTAGGGAAAGAAGAGAATTGCGTCGCAAATATTAGAGTGTTTTAATATAA
CACATATAAACATCGGTGATGTCTTGAGAAATAATGTTGAGAAACTTAGCCCATTGGGTG
TGGATATAGAAAAATATGTTAATAAAGGAGCACTTTTGCCAGATGATGACATGCTTAAAA
TTGTTCTCAAAGAGATAAATGATATTCATGGATCATTTTTTCTTGATGGTTTTCCAAGAA
CAAAAACACAAGCTGAAAAACTTTGGGAAGTGCAAAAAATTGATTCTGTTATCAATTTAG
TCGTACCGAAAGATGTGATTATAGATGATGCTAAGCATCGATATGTTCATGAGCCAAGTG
GAAGAGTTTATAATATTAAAGAAAATGCCATGAAAACTGATATCACAGGAGAACCATTGT
CAAAGCAAGATTATGATGAACCAGAAGTTACTGAAAAATGGTTGAAATTTTATAAGGAAC
AAACTACTCCAATGATTGAATTTTACAAGTTAAAAGGAATCTTCAATGAATTTGAGGGAG
AAACAACTCACGAAATATGGGAAAAACTAAAACCATTTTTAAGCGAAAGAGTCGATAAAC
AAAAATAA
>g14020.t3 Gene=g14020 Length=145
MLKIVLKEINDIHGSFFLDGFPRTKTQAEKLWEVQKIDSVINLVVPKDVIIDDAKHRYVH
EPSGRVYNIKENAMKTDITGEPLSKQDYDEPEVTEKWLKFYKEQTTPMIEFYKLKGIFNE
FEGETTHEIWEKLKPFLSERVDKQK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g14020.t3 | CDD | cd01428 | ADK | 1 | 126 | 5.7557E-31 |
| 9 | g14020.t3 | Gene3D | G3DSA:3.40.50.300 | - | 1 | 145 | 3.3E-34 |
| 2 | g14020.t3 | PANTHER | PTHR23359 | NUCLEOTIDE KINASE | 1 | 143 | 4.2E-30 |
| 3 | g14020.t3 | PANTHER | PTHR23359:SF68 | GTP:AMP PHOSPHOTRANSFERASE AK3, MITOCHONDRIAL | 1 | 143 | 4.2E-30 |
| 6 | g14020.t3 | PRINTS | PR00094 | Adenylate kinase signature | 16 | 32 | 3.0E-10 |
| 4 | g14020.t3 | PRINTS | PR00094 | Adenylate kinase signature | 86 | 101 | 3.0E-10 |
| 5 | g14020.t3 | PRINTS | PR00094 | Adenylate kinase signature | 103 | 117 | 3.0E-10 |
| 1 | g14020.t3 | Pfam | PF00406 | Adenylate kinase | 3 | 116 | 3.5E-14 |
| 8 | g14020.t3 | ProSitePatterns | PS00113 | Adenylate kinase signature. | 16 | 27 | - |
| 7 | g14020.t3 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 6 | 140 | 3.73E-11 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0006139 | nucleobase-containing compound metabolic process | BP |
| GO:0019205 | nucleobase-containing compound kinase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
