Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative GTP:AMP phosphotransferase AK3, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g14020 g14020.t5 TTS g14020.t5 34096509 34096509
chr_1 g14020 g14020.t5 isoform g14020.t5 34096648 34097600
chr_1 g14020 g14020.t5 exon g14020.t5.exon1 34096648 34096874
chr_1 g14020 g14020.t5 cds g14020.t5.CDS1 34096648 34096874
chr_1 g14020 g14020.t5 exon g14020.t5.exon2 34096979 34097035
chr_1 g14020 g14020.t5 cds g14020.t5.CDS2 34096979 34097035
chr_1 g14020 g14020.t5 exon g14020.t5.exon3 34097097 34097406
chr_1 g14020 g14020.t5 cds g14020.t5.CDS3 34097097 34097250
chr_1 g14020 g14020.t5 exon g14020.t5.exon4 34097487 34097600
chr_1 g14020 g14020.t5 TSS g14020.t5 34097632 34097632

Sequences

>g14020.t5 Gene=g14020 Length=708
ATGTCAAAATTATTTCGAGCAGTTCTATTAGGTAAAATTTAAAAATAAATAAATATTTTT
TGATACTTTTAATACTTTTTAATTATTTTATTCTTATTAGGAGCTCCAGGAGCTGGAAAG
AAGAGAATTGCGTCGCAAATATTAGAGTGTTTTAATATAACACATATAAACATCGGTGAT
GTCTTGAGAAATAATGTTGAGAAACTTAGCCCATTGGGTGTGGATATAGAAAAATATGTT
AATAAAGGAGCACTTTTGCCAGATGATGACATGCTTAAAATTGTTCTCAAAGAGATAAAT
GATATTCATGGATCATTTTTTCTTGATGGTTTTCCAAGAACAAAAACACAAGCTGAAAAA
CTTTGGGAAGTGCAAAAAATTGATTCTGTTATCAATTTAGTCGTACCGAAAGATGTGATT
ATAGATGATGCTAAGCATCGATATGTTCATGAGCCAAGTGGAAGAGTTTATAATATTAAA
GAAAATGCCATGAAAACTGATATCACAGGAGAACCATTGTCAAAGCAAGATTATGATGAA
CCAGAAGTTACTGAAAAATGGTTGAAATTTTATAAGGAACAAACTACTCCAATGATTGAA
TTTTACAAGTTAAAAGGAATCTTCAATGAATTTGAGGGAGAAACAACTCACGAAATATGG
GAAAAACTAAAACCATTTTTAAGCGAAAGAGTCGATAAACAAAAATAA

>g14020.t5 Gene=g14020 Length=145
MLKIVLKEINDIHGSFFLDGFPRTKTQAEKLWEVQKIDSVINLVVPKDVIIDDAKHRYVH
EPSGRVYNIKENAMKTDITGEPLSKQDYDEPEVTEKWLKFYKEQTTPMIEFYKLKGIFNE
FEGETTHEIWEKLKPFLSERVDKQK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g14020.t5 CDD cd01428 ADK 1 126 5.7557E-31
9 g14020.t5 Gene3D G3DSA:3.40.50.300 - 1 145 3.3E-34
2 g14020.t5 PANTHER PTHR23359 NUCLEOTIDE KINASE 1 143 4.2E-30
3 g14020.t5 PANTHER PTHR23359:SF68 GTP:AMP PHOSPHOTRANSFERASE AK3, MITOCHONDRIAL 1 143 4.2E-30
6 g14020.t5 PRINTS PR00094 Adenylate kinase signature 16 32 3.0E-10
4 g14020.t5 PRINTS PR00094 Adenylate kinase signature 86 101 3.0E-10
5 g14020.t5 PRINTS PR00094 Adenylate kinase signature 103 117 3.0E-10
1 g14020.t5 Pfam PF00406 Adenylate kinase 3 116 3.5E-14
8 g14020.t5 ProSitePatterns PS00113 Adenylate kinase signature. 16 27 -
7 g14020.t5 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 6 140 3.73E-11

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0019205 nucleobase-containing compound kinase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed