General information for g14023.t13
Yuki Yoshida
6/2/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Alcohol dehydrogenase class-3.
Parent gene
- The parent gene g14023 is located on chr_1: 34103849..34104511 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14023 | g14023.t13 | TTS | g14023.t13 | 34102731 | 34102731 |
| chr_1 | g14023 | g14023.t13 | isoform | g14023.t13 | 34102827 | 34104511 |
| chr_1 | g14023 | g14023.t13 | exon | g14023.t13.exon1 | 34102827 | 34103108 |
| chr_1 | g14023 | g14023.t13 | cds | g14023.t13.CDS1 | 34102827 | 34103108 |
| chr_1 | g14023 | g14023.t13 | exon | g14023.t13.exon2 | 34103399 | 34103655 |
| chr_1 | g14023 | g14023.t13 | cds | g14023.t13.CDS2 | 34103399 | 34103655 |
| chr_1 | g14023 | g14023.t13 | exon | g14023.t13.exon3 | 34103722 | 34103781 |
| chr_1 | g14023 | g14023.t13 | cds | g14023.t13.CDS3 | 34103722 | 34103781 |
| chr_1 | g14023 | g14023.t13 | exon | g14023.t13.exon4 | 34103850 | 34104181 |
| chr_1 | g14023 | g14023.t13 | cds | g14023.t13.CDS4 | 34103850 | 34104018 |
| chr_1 | g14023 | g14023.t13 | exon | g14023.t13.exon5 | 34104242 | 34104314 |
| chr_1 | g14023 | g14023.t13 | exon | g14023.t13.exon6 | 34104377 | 34104511 |
| chr_1 | g14023 | g14023.t13 | TSS | g14023.t13 | 34104576 | 34104576 |
Sequences
>g14023.t13 Gene=g14023 Length=1139
ATGACTGAAGGGAAAGTAATTAGTTGTCGTGCAGCTGTTGCTTGGGAAGCTAACAAGCCA
TTGTCAATCGAAGAAATTCAAGTTCAACCACCAAAATCTGGTGAAGTTCGAGTAAAAATT
TTTGCAACCGGTGTTTGTCATACTGACGCATATACACTAAGTGGAATTGATCCAGAAGGA
CTTTTTCCGAGCATTCTTGGTCATGAAGAGGCGCTGGAATTGTGGAATCAGTTGGTGAAG
GTGTAACAAATTTTAAGGCAGGCGACCATGTTATTCCTCTTTATACACCACAATGCAAAG
AGTGTCAATATTGCAAAAGCAAAAAGACAAATTTGTGTCAAAAAATCCGCTTAACTCAAG
GTAAAGGTGTAATGCCAGATGGCACTTCACGTTTTACATGCAAAGACAAGCAATTATATC
ATTTTATGGGCTGCTCTACATTCTCTGAGTATACTGTCGTTAGTCAAATTTCTTTGTGCA
AAGTTGCCGAGTCTGCACCTCTTGAAAAAATATGCCTTCTCGGATGTGGCATACCAACCG
GCTATGGAGCTGCAGTTAATACAGCAGGTGTTGAAGAAGGAAGTGTTGTCGCCATTTGGG
GTCTTGGTGCAGTCGGTCTTGCTGTAATTGCAGGATGCAAAGATTTAAAAGCTAAGACAA
TCATTGGAATTGATATAAATGAATCTAAATTTGAAATAGCAAAATCCTTTGGTGTAACTG
ACTTCGTCAATCCAAAAAAATTGCCTGAAGGAAAAACAATTCAGGAATATCTTTTTGACA
ATTTTGATGGAGGTCCTGATTATACGTTTGAATGCATTGGAAATGTTCAAACAATGAGAC
AAGCATTAGAATCAGCGCATAAAGGTTGGGGCGTCTCTGTAATTATAGGTGTTGCCGGTG
CTGGACAAGAAATTTCAACACGCCCGTTTCAACTTGTCACTGGTCGTGTATGGAAAGGAA
CAGCCTTTGGAGGCTACAAAAGCGTAGAAAGTATACCAAAATTAGTTGATCGCTATCTCG
CTGGCAATTTTAAAATTGATGAATTCATCACTCATAATGTAAATCTTGATAAAATCAATG
AAGCTTTTGATTTAATGCATGAGGGAAAGAGCATTAGAACTATTGTTCATTTCAAATAG
>g14023.t13 Gene=g14023 Length=255
MPDGTSRFTCKDKQLYHFMGCSTFSEYTVVSQISLCKVAESAPLEKICLLGCGIPTGYGA
AVNTAGVEEGSVVAIWGLGAVGLAVIAGCKDLKAKTIIGIDINESKFEIAKSFGVTDFVN
PKKLPEGKTIQEYLFDNFDGGPDYTFECIGNVQTMRQALESAHKGWGVSVIIGVAGAGQE
ISTRPFQLVTGRVWKGTAFGGYKSVESIPKLVDRYLAGNFKIDEFITHNVNLDKINEAFD
LMHEGKSIRTIVHFK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g14023.t13 | Coils | Coil | Coil | 254 | 255 | - |
| 7 | g14023.t13 | Gene3D | G3DSA:3.40.50.720 | - | 64 | 195 | 3.8E-31 |
| 2 | g14023.t13 | PANTHER | PTHR43880:SF21 | S-(HYDROXYMETHYL)GLUTATHIONE DEHYDROGENASE | 1 | 253 | 3.4E-123 |
| 3 | g14023.t13 | PANTHER | PTHR43880 | ALCOHOL DEHYDROGENASE | 1 | 253 | 3.4E-123 |
| 1 | g14023.t13 | Pfam | PF00107 | Zinc-binding dehydrogenase | 80 | 204 | 2.9E-21 |
| 5 | g14023.t13 | SUPERFAMILY | SSF50129 | GroES-like | 1 | 61 | 1.4E-16 |
| 4 | g14023.t13 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 43 | 218 | 4.3E-42 |
| 6 | g14023.t13 | SUPERFAMILY | SSF50129 | GroES-like | 204 | 254 | 9.18E-13 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
## [1] "No matching GO terms"KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed