Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Alcohol dehydrogenase class-3.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g14023 g14023.t16 TTS g14023.t16 34102731 34102731
chr_1 g14023 g14023.t16 isoform g14023.t16 34102827 34104511
chr_1 g14023 g14023.t16 exon g14023.t16.exon1 34102827 34103108
chr_1 g14023 g14023.t16 cds g14023.t16.CDS1 34102827 34103108
chr_1 g14023 g14023.t16 exon g14023.t16.exon2 34103399 34103781
chr_1 g14023 g14023.t16 cds g14023.t16.CDS2 34103399 34103422
chr_1 g14023 g14023.t16 exon g14023.t16.exon3 34103850 34104179
chr_1 g14023 g14023.t16 exon g14023.t16.exon4 34104242 34104314
chr_1 g14023 g14023.t16 exon g14023.t16.exon5 34104382 34104511
chr_1 g14023 g14023.t16 TSS g14023.t16 34104576 34104576

Sequences

>g14023.t16 Gene=g14023 Length=1198
ATGACTGAAGGGAAAGTAATTAGTTGTCGTGCAGCTGTTGCTTGGGAAGCTAACAAGCCA
TTGTCAATCGAAGAAATTCAAGTTCAACCACCAAAATCTGGTGAAGTTCGAGTAAAAATT
TTTGCAACCGTGTCATACTGACGCATATACACTAAGTGGAATTGATCCAGAAGGACTTTT
TCCGAGCATTCTTGGTCATGAAGGCGCTGGAATTGTGGAATCAGTTGGTGAAGGTGTAAC
AAATTTTAAGGCAGGCGACCATGTTATTCCTCTTTATACACCACAATGCAAAGAGTGTCA
ATATTGCAAAAGCAAAAAGACAAATTTGTGTCAAAAAATCCGCTTAACTCAAGGTAAAGG
TGTAATGCCAGATGGCACTTCACGTTTTACATGCAAAGACAAGCAATTATATCATTTTAT
GGGCTGCTCTACATTCTCTGAGTATACTGTCGTTAGTCAAATTTCTTTGTGCAAAGTTGC
CGAGTCTGCACCTCTTGAAAAAATATGCCTTCTCGGATGTGGCATACCAACCGGCTATGG
AGCTGCAGTTAATACAGCAGGTGTTGAAGAAGGAAGTGTTGTCGCCATTTGGGGTCAGAT
AAATTTGCTTTTATTTATTTGATTTATATGAAAAATTTAACTACGATATTTTTTCATAGG
TCTTGGTGCAGTCGGTCTTGCTGTAATTGCAGGATGCAAAGATTTAAAAGCTAAGACAAT
CATTGGAATTGATATAAATGAATCTAAATTTGAAATAGCAAAATCCTTTGGTGTAACTGA
CTTCGTCAATCCAAAAAAATTGCCTGAAGGAAAAACAATTCAGGAATATCTTTTTGACAA
TTTTGATGGAGGTCCTGATTATACGTTTGAATGCATTGGAAATGTTCAAACAATGAGACA
AGCATTAGAATCAGCGCATAAAGGTTGGGGCGTCTCTGTAATTATAGGTGTTGCCGGTGC
TGGACAAGAAATTTCAACACGCCCGTTTCAACTTGTCACTGGTCGTGTATGGAAAGGAAC
AGCCTTTGGAGGCTACAAAAGCGTAGAAAGTATACCAAAATTAGTTGATCGCTATCTCGC
TGGCAATTTTAAAATTGATGAATTCATCACTCATAATGTAAATCTTGATAAAATCAATGA
AGCTTTTGATTTAATGCATGAGGGAAAGAGCATTAGAACTATTGTTCATTTCAAATAG

>g14023.t16 Gene=g14023 Length=101
MRQALESAHKGWGVSVIIGVAGAGQEISTRPFQLVTGRVWKGTAFGGYKSVESIPKLVDR
YLAGNFKIDEFITHNVNLDKINEAFDLMHEGKSIRTIVHFK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g14023.t16 Gene3D G3DSA:3.40.50.720 - 1 39 0.00e+00
6 g14023.t16 Gene3D G3DSA:3.90.180.10 - 40 101 4.00e-07
1 g14023.t16 PANTHER PTHR43880:SF21 S-(HYDROXYMETHYL)GLUTATHIONE DEHYDROGENASE 1 99 0.00e+00
2 g14023.t16 PANTHER PTHR43880 ALCOHOL DEHYDROGENASE 1 99 0.00e+00
3 g14023.t16 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains 1 64 2.76e-05
4 g14023.t16 SUPERFAMILY SSF50129 GroES-like 50 100 0.00e+00

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed