General information for g14023.t19
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Alcohol dehydrogenase class-3.
Parent gene
- The parent gene g14023 is located on chr_1: 34103849..34104511 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14023 | g14023.t19 | TTS | g14023.t19 | 34102731 | 34102731 |
| chr_1 | g14023 | g14023.t19 | isoform | g14023.t19 | 34102827 | 34104511 |
| chr_1 | g14023 | g14023.t19 | exon | g14023.t19.exon1 | 34102827 | 34103334 |
| chr_1 | g14023 | g14023.t19 | cds | g14023.t19.CDS1 | 34103290 | 34103334 |
| chr_1 | g14023 | g14023.t19 | exon | g14023.t19.exon2 | 34103399 | 34103655 |
| chr_1 | g14023 | g14023.t19 | cds | g14023.t19.CDS2 | 34103399 | 34103655 |
| chr_1 | g14023 | g14023.t19 | exon | g14023.t19.exon3 | 34103722 | 34103781 |
| chr_1 | g14023 | g14023.t19 | cds | g14023.t19.CDS3 | 34103722 | 34103781 |
| chr_1 | g14023 | g14023.t19 | exon | g14023.t19.exon4 | 34103850 | 34104179 |
| chr_1 | g14023 | g14023.t19 | cds | g14023.t19.CDS4 | 34103850 | 34104179 |
| chr_1 | g14023 | g14023.t19 | exon | g14023.t19.exon5 | 34104242 | 34104314 |
| chr_1 | g14023 | g14023.t19 | cds | g14023.t19.CDS5 | 34104242 | 34104314 |
| chr_1 | g14023 | g14023.t19 | exon | g14023.t19.exon6 | 34104377 | 34104511 |
| chr_1 | g14023 | g14023.t19 | cds | g14023.t19.CDS6 | 34104377 | 34104511 |
| chr_1 | g14023 | g14023.t19 | TSS | g14023.t19 | 34104576 | 34104576 |
Sequences
>g14023.t19 Gene=g14023 Length=1363
ATGACTGAAGGGAAAGTAATTAGTTGTCGTGCAGCTGTTGCTTGGGAAGCTAACAAGCCA
TTGTCAATCGAAGAAATTCAAGTTCAACCACCAAAATCTGGTGAAGTTCGAGTAAAAATT
TTTGCAACCGGTGTTTGTCATACTGACGCATATACACTAAGTGGAATTGATCCAGAAGGA
CTTTTTCCGAGCATTCTTGGTCATGAAGGCGCTGGAATTGTGGAATCAGTTGGTGAAGGT
GTAACAAATTTTAAGGCAGGCGACCATGTTATTCCTCTTTATACACCACAATGCAAAGAG
TGTCAATATTGCAAAAGCAAAAAGACAAATTTGTGTCAAAAAATCCGCTTAACTCAAGGT
AAAGGTGTAATGCCAGATGGCACTTCACGTTTTACATGCAAAGACAAGCAATTATATCAT
TTTATGGGCTGCTCTACATTCTCTGAGTATACTGTCGTTAGTCAAATTTCTTTGTGCAAA
GTTGCCGAGTCTGCACCTCTTGAAAAAATATGCCTTCTCGGATGTGGCATACCAACCGGC
TATGGAGCTGCAGTTAATACAGCAGGTGTTGAAGAAGGAAGTGTTGTCGCCATTTGGGGT
CTTGGTGCAGTCGGTCTTGCTGTAATTGCAGGATGCAAAGATTTAAAAGCTAAGACAATC
ATTGGAATTGATATAAATGAATCTAAATTTGAAATAGCAAAATCCTTTGGTGTAACTGAC
TTCGTCAATCCAAAAAAATTGCCTGAAGGAAAAACAATTCAGGAATATCTTTTTGACAAT
TTTGATGGAGGTCCTGATTATACGTTTGAATGCATTGGAAATGTTCAAACAATGAGACAA
GCATTAGAATCAGCGATAGAAAAAAAATTATTCGGTGAACTCCGCTTGGCATACGCATGA
TATTGTCCGCCTATCGCCTTCCCTCGAATAAAAGGACCGGCCCTTATAATCGAATCAAAA
CAAGAAATTTTGGAAAATTTATGATGATTCTATCTGGGTTCCTCGAAATCTTTAGATAAC
TATTTAAAATTTTAATCCCTTATTAAATAATTTTTATTTCTCTTTTCTACTTTTTTTTCA
GCATAAAGGTTGGGGCGTCTCTGTAATTATAGGTGTTGCCGGTGCTGGACAAGAAATTTC
AACACGCCCGTTTCAACTTGTCACTGGTCGTGTATGGAAAGGAACAGCCTTTGGAGGCTA
CAAAAGCGTAGAAAGTATACCAAAATTAGTTGATCGCTATCTCGCTGGCAATTTTAAAAT
TGATGAATTCATCACTCATAATGTAAATCTTGATAAAATCAATGAAGCTTTTGATTTAAT
GCATGAGGGAAAGAGCATTAGAACTATTGTTCATTTCAAATAG
>g14023.t19 Gene=g14023 Length=299
MTEGKVISCRAAVAWEANKPLSIEEIQVQPPKSGEVRVKIFATGVCHTDAYTLSGIDPEG
LFPSILGHEGAGIVESVGEGVTNFKAGDHVIPLYTPQCKECQYCKSKKTNLCQKIRLTQG
KGVMPDGTSRFTCKDKQLYHFMGCSTFSEYTVVSQISLCKVAESAPLEKICLLGCGIPTG
YGAAVNTAGVEEGSVVAIWGLGAVGLAVIAGCKDLKAKTIIGIDINESKFEIAKSFGVTD
FVNPKKLPEGKTIQEYLFDNFDGGPDYTFECIGNVQTMRQALESAIEKKLFGELRLAYA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g14023.t19 | Coils | Coil | Coil | 299 | 299 | - |
| 9 | g14023.t19 | Gene3D | G3DSA:3.90.180.10 | - | 12 | 179 | 4.4E-112 |
| 8 | g14023.t19 | Gene3D | G3DSA:3.40.50.720 | - | 180 | 286 | 4.4E-112 |
| 3 | g14023.t19 | PANTHER | PTHR43880:SF21 | S-(HYDROXYMETHYL)GLUTATHIONE DEHYDROGENASE | 3 | 285 | 1.0E-143 |
| 4 | g14023.t19 | PANTHER | PTHR43880 | ALCOHOL DEHYDROGENASE | 3 | 285 | 1.0E-143 |
| 2 | g14023.t19 | Pfam | PF08240 | Alcohol dehydrogenase GroES-like domain | 34 | 160 | 2.1E-24 |
| 1 | g14023.t19 | Pfam | PF00107 | Zinc-binding dehydrogenase | 203 | 284 | 5.3E-15 |
| 7 | g14023.t19 | ProSitePatterns | PS00059 | Zinc-containing alcohol dehydrogenases signature. | 67 | 81 | - |
| 6 | g14023.t19 | SUPERFAMILY | SSF50129 | GroES-like | 2 | 184 | 6.54E-77 |
| 5 | g14023.t19 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 166 | 284 | 4.71E-31 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008270 | zinc ion binding | MF |
| GO:0055114 | NA | NA |
| GO:0016491 | oxidoreductase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K13979 (alcohol dehydrogenase (NADP+))
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
