General information for g14023.t21
Yuki Yoshida
6/2/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Alcohol dehydrogenase class-3.
Parent gene
- The parent gene g14023 is located on chr_1: 34103849..34104511 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14023 | g14023.t21 | TTS | g14023.t21 | 34102731 | 34102731 |
| chr_1 | g14023 | g14023.t21 | isoform | g14023.t21 | 34103318 | 34104171 |
| chr_1 | g14023 | g14023.t21 | exon | g14023.t21.exon1 | 34103318 | 34103334 |
| chr_1 | g14023 | g14023.t21 | cds | g14023.t21.CDS1 | 34103320 | 34103334 |
| chr_1 | g14023 | g14023.t21 | exon | g14023.t21.exon2 | 34103399 | 34103655 |
| chr_1 | g14023 | g14023.t21 | cds | g14023.t21.CDS2 | 34103399 | 34103655 |
| chr_1 | g14023 | g14023.t21 | exon | g14023.t21.exon3 | 34103722 | 34103781 |
| chr_1 | g14023 | g14023.t21 | cds | g14023.t21.CDS3 | 34103722 | 34103781 |
| chr_1 | g14023 | g14023.t21 | exon | g14023.t21.exon4 | 34103850 | 34104171 |
| chr_1 | g14023 | g14023.t21 | cds | g14023.t21.CDS4 | 34103850 | 34104018 |
| chr_1 | g14023 | g14023.t21 | TSS | g14023.t21 | 34104576 | 34104576 |
Sequences
>g14023.t21 Gene=g14023 Length=656
ATTGTGGAATCAGTTGGTGAAGGTGTAACAAATTTTAAGGCAGGCGACCATGTTATTCCT
CTTTATACACCACAATGCAAAGAGTGTCAATATTGCAAAAGCAAAAAGACAAATTTGTGT
CAAAAAATCCGCTTAACTCAAGGTAAAGGTGTAATGCCAGATGGCACTTCACGTTTTACA
TGCAAAGACAAGCAATTATATCATTTTATGGGCTGCTCTACATTCTCTGAGTATACTGTC
GTTAGTCAAATTTCTTTGTGCAAAGTTGCCGAGTCTGCACCTCTTGAAAAAATATGCCTT
CTCGGATGTGGCATACCAACCGGCTATGGAGCTGCAGTTAATACAGCAGGTGTTGAAGAA
GGAAGTGTTGTCGCCATTTGGGGTCTTGGTGCAGTCGGTCTTGCTGTAATTGCAGGATGC
AAAGATTTAAAAGCTAAGACAATCATTGGAATTGATATAAATGAATCTAAATTTGAAATA
GCAAAATCCTTTGGTGTAACTGACTTCGTCAATCCAAAAAAATTGCCTGAAGGAAAAACA
ATTCAGGAATATCTTTTTGACAATTTTGATGGAGGTCCTGATTATACGTTTGAATGCATT
GGAAATGTTCAAACAATGAGACAAGCATTAGAATCAGCGATAGAAAAAAAATTATT
>g14023.t21 Gene=g14023 Length=167
MPDGTSRFTCKDKQLYHFMGCSTFSEYTVVSQISLCKVAESAPLEKICLLGCGIPTGYGA
AVNTAGVEEGSVVAIWGLGAVGLAVIAGCKDLKAKTIIGIDINESKFEIAKSFGVTDFVN
PKKLPEGKTIQEYLFDNFDGGPDYTFECIGNVQTMRQALESAIEKKL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g14023.t21 | Gene3D | G3DSA:3.90.180.10 | - | 1 | 64 | 0 |
| 6 | g14023.t21 | Gene3D | G3DSA:3.40.50.720 | - | 65 | 164 | 0 |
| 2 | g14023.t21 | PANTHER | PTHR43880:SF21 | S-(HYDROXYMETHYL)GLUTATHIONE DEHYDROGENASE | 1 | 162 | 0 |
| 3 | g14023.t21 | PANTHER | PTHR43880 | ALCOHOL DEHYDROGENASE | 1 | 162 | 0 |
| 1 | g14023.t21 | Pfam | PF00107 | Zinc-binding dehydrogenase | 80 | 161 | 0 |
| 5 | g14023.t21 | SUPERFAMILY | SSF50129 | GroES-like | 1 | 61 | 0 |
| 4 | g14023.t21 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 43 | 161 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
## [1] "No matching GO terms"KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
