General information for g14023.t23
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Alcohol dehydrogenase class-3.
Parent gene
- The parent gene g14023 is located on chr_1: 34103849..34104511 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14023 | g14023.t23 | TTS | g14023.t23 | 34102731 | 34102731 |
| chr_1 | g14023 | g14023.t23 | isoform | g14023.t23 | 34103556 | 34104169 |
| chr_1 | g14023 | g14023.t23 | exon | g14023.t23.exon1 | 34103556 | 34103655 |
| chr_1 | g14023 | g14023.t23 | cds | g14023.t23.CDS1 | 34103558 | 34103655 |
| chr_1 | g14023 | g14023.t23 | exon | g14023.t23.exon2 | 34103722 | 34103781 |
| chr_1 | g14023 | g14023.t23 | cds | g14023.t23.CDS2 | 34103722 | 34103781 |
| chr_1 | g14023 | g14023.t23 | exon | g14023.t23.exon3 | 34103850 | 34104169 |
| chr_1 | g14023 | g14023.t23 | cds | g14023.t23.CDS3 | 34103850 | 34104018 |
| chr_1 | g14023 | g14023.t23 | TSS | g14023.t23 | 34104576 | 34104576 |
Sequences
>g14023.t23 Gene=g14023 Length=480
TGTGGAATCAGTTGGTGAAGGTGTAACAAATTTTAAGGCAGGCGACCATGTTATTCCTCT
TTATACACCACAATGCAAAGAGTGTCAATATTGCAAAAGCAAAAAGACAAATTTGTGTCA
AAAAATCCGCTTAACTCAAGGTAAAGGTGTAATGCCAGATGGCACTTCACGTTTTACATG
CAAAGACAAGCAATTATATCATTTTATGGGCTGCTCTACATTCTCTGAGTATACTGTCGT
TAGTCAAATTTCTTTGTGCAAAGTTGCCGAGTCTGCACCTCTTGAAAAAATATGCCTTCT
CGGATGTGGCATACCAACCGGCTATGGAGCTGCAGTTAATACAGCAGGTGTTGAAGAAGG
AAGTGTTGTCGCCATTTGGGGTCTTGGTGCAGTCGGTCTTGCTGTAATTGCAGGATGCAA
AGATTTAAAAGCTAAGACAATCATTGGAATTGATATAAATGAATCTAAATTTGAAATAGC
>g14023.t23 Gene=g14023 Length=109
MPDGTSRFTCKDKQLYHFMGCSTFSEYTVVSQISLCKVAESAPLEKICLLGCGIPTGYGA
AVNTAGVEEGSVVAIWGLGAVGLAVIAGCKDLKAKTIIGIDINESKFEI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g14023.t23 | Gene3D | G3DSA:3.90.180.10 | - | 13 | 54 | 0 |
| 5 | g14023.t23 | Gene3D | G3DSA:3.40.50.720 | - | 55 | 109 | 0 |
| 1 | g14023.t23 | PANTHER | PTHR43880:SF21 | S-(HYDROXYMETHYL)GLUTATHIONE DEHYDROGENASE | 1 | 108 | 0 |
| 2 | g14023.t23 | PANTHER | PTHR43880 | ALCOHOL DEHYDROGENASE | 1 | 108 | 0 |
| 4 | g14023.t23 | SUPERFAMILY | SSF50129 | GroES-like | 1 | 61 | 0 |
| 3 | g14023.t23 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 43 | 108 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
