General information for g14023.t24
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Alcohol dehydrogenase class-3.
Parent gene
- The parent gene g14023 is located on chr_1: 34103849..34104511 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14023 | g14023.t24 | isoform | g14023.t24 | 34103849 | 34104511 |
| chr_1 | g14023 | g14023.t24 | exon | g14023.t24.exon1 | 34103849 | 34104179 |
| chr_1 | g14023 | g14023.t24 | cds | g14023.t24.CDS1 | 34103851 | 34104179 |
| chr_1 | g14023 | g14023.t24 | exon | g14023.t24.exon2 | 34104242 | 34104314 |
| chr_1 | g14023 | g14023.t24 | cds | g14023.t24.CDS2 | 34104242 | 34104314 |
| chr_1 | g14023 | g14023.t24 | exon | g14023.t24.exon3 | 34104377 | 34104511 |
| chr_1 | g14023 | g14023.t24 | cds | g14023.t24.CDS3 | 34104377 | 34104511 |
| chr_1 | g14023 | g14023.t24 | TSS | g14023.t24 | 34104576 | 34104576 |
| chr_1 | g14023 | g14023.t24 | TTS | g14023.t24 | NA | NA |
Sequences
>g14023.t24 Gene=g14023 Length=539
ATGACTGAAGGGAAAGTAATTAGTTGTCGTGCAGCTGTTGCTTGGGAAGCTAACAAGCCA
TTGTCAATCGAAGAAATTCAAGTTCAACCACCAAAATCTGGTGAAGTTCGAGTAAAAATT
TTTGCAACCGGTGTTTGTCATACTGACGCATATACACTAAGTGGAATTGATCCAGAAGGA
CTTTTTCCGAGCATTCTTGGTCATGAAGGCGCTGGAATTGTGGAATCAGTTGGTGAAGGT
GTAACAAATTTTAAGGCAGGCGACCATGTTATTCCTCTTTATACACCACAATGCAAAGAG
TGTCAATATTGCAAAAGCAAAAAGACAAATTTGTGTCAAAAAATCCGCTTAACTCAAGGT
AAAGGTGTAATGCCAGATGGCACTTCACGTTTTACATGCAAAGACAAGCAATTATATCAT
TTTATGGGCTGCTCTACATTCTCTGAGTATACTGTCGTTAGTCAAATTTCTTTGTGCAAA
GTTGCCGAGTCTGCACCTCTTGAAAAAATATGCCTTCTCGGATGTGGCATACCAACCGG
>g14023.t24 Gene=g14023 Length=179
MTEGKVISCRAAVAWEANKPLSIEEIQVQPPKSGEVRVKIFATGVCHTDAYTLSGIDPEG
LFPSILGHEGAGIVESVGEGVTNFKAGDHVIPLYTPQCKECQYCKSKKTNLCQKIRLTQG
KGVMPDGTSRFTCKDKQLYHFMGCSTFSEYTVVSQISLCKVAESAPLEKICLLGCGIPT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g14023.t24 | Gene3D | G3DSA:3.90.180.10 | - | 1 | 179 | 1.9E-67 |
| 2 | g14023.t24 | PANTHER | PTHR43880:SF21 | S-(HYDROXYMETHYL)GLUTATHIONE DEHYDROGENASE | 3 | 179 | 5.7E-97 |
| 3 | g14023.t24 | PANTHER | PTHR43880 | ALCOHOL DEHYDROGENASE | 3 | 179 | 5.7E-97 |
| 1 | g14023.t24 | Pfam | PF08240 | Alcohol dehydrogenase GroES-like domain | 34 | 160 | 6.0E-25 |
| 5 | g14023.t24 | ProSitePatterns | PS00059 | Zinc-containing alcohol dehydrogenases signature. | 67 | 81 | - |
| 4 | g14023.t24 | SUPERFAMILY | SSF50129 | GroES-like | 2 | 177 | 5.48E-77 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008270 | zinc ion binding | MF |
| GO:0055114 | NA | NA |
| GO:0016491 | oxidoreductase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
