General information for g14023.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Alcohol dehydrogenase class-3.
Parent gene
- The parent gene g14023 is located on chr_1: 34103849..34104511 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g14023 | g14023.t5 | TTS | g14023.t5 | 34102731 | 34102731 |
| chr_1 | g14023 | g14023.t5 | isoform | g14023.t5 | 34102827 | 34104174 |
| chr_1 | g14023 | g14023.t5 | exon | g14023.t5.exon1 | 34102827 | 34103108 |
| chr_1 | g14023 | g14023.t5 | cds | g14023.t5.CDS1 | 34102827 | 34103108 |
| chr_1 | g14023 | g14023.t5 | exon | g14023.t5.exon2 | 34103399 | 34103781 |
| chr_1 | g14023 | g14023.t5 | cds | g14023.t5.CDS2 | 34103399 | 34103422 |
| chr_1 | g14023 | g14023.t5 | exon | g14023.t5.exon3 | 34103850 | 34104174 |
| chr_1 | g14023 | g14023.t5 | TSS | g14023.t5 | 34104576 | 34104576 |
Sequences
>g14023.t5 Gene=g14023 Length=990
GGAATTGTGGAATCAGTTGGTGAAGGTGTAACAAATTTTAAGGCAGGCGACCATGTTATT
CCTCTTTATACACCACAATGCAAAGAGTGTCAATATTGCAAAAGCAAAAAGACAAATTTG
TGTCAAAAAATCCGCTTAACTCAAGGTAAAGGTGTAATGCCAGATGGCACTTCACGTTTT
ACATGCAAAGACAAGCAATTATATCATTTTATGGGCTGCTCTACATTCTCTGAGTATACT
GTCGTTAGTCAAATTTCTTTGTGCAAAGTTGCCGAGTCTGCACCTCTTGAAAAAATATGC
CTTCTCGGATGTGGCATACCAACCGGCTATGGAGCTGCAGTTAATACAGCAGGTGTTGAA
GAAGGAAGTGTTGTCGCCATTTGGGGTCAGATAAATTTGCTTTTATTTATTTGATTTATA
TGAAAAATTTAACTACGATATTTTTTCATAGGTCTTGGTGCAGTCGGTCTTGCTGTAATT
GCAGGATGCAAAGATTTAAAAGCTAAGACAATCATTGGAATTGATATAAATGAATCTAAA
TTTGAAATAGCAAAATCCTTTGGTGTAACTGACTTCGTCAATCCAAAAAAATTGCCTGAA
GGAAAAACAATTCAGGAATATCTTTTTGACAATTTTGATGGAGGTCCTGATTATACGTTT
GAATGCATTGGAAATGTTCAAACAATGAGACAAGCATTAGAATCAGCGCATAAAGGTTGG
GGCGTCTCTGTAATTATAGGTGTTGCCGGTGCTGGACAAGAAATTTCAACACGCCCGTTT
CAACTTGTCACTGGTCGTGTATGGAAAGGAACAGCCTTTGGAGGCTACAAAAGCGTAGAA
AGTATACCAAAATTAGTTGATCGCTATCTCGCTGGCAATTTTAAAATTGATGAATTCATC
ACTCATAATGTAAATCTTGATAAAATCAATGAAGCTTTTGATTTAATGCATGAGGGAAAG
AGCATTAGAACTATTGTTCATTTCAAATAG
>g14023.t5 Gene=g14023 Length=101
MRQALESAHKGWGVSVIIGVAGAGQEISTRPFQLVTGRVWKGTAFGGYKSVESIPKLVDR
YLAGNFKIDEFITHNVNLDKINEAFDLMHEGKSIRTIVHFK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g14023.t5 | Gene3D | G3DSA:3.40.50.720 | - | 1 | 39 | 0.00e+00 |
| 6 | g14023.t5 | Gene3D | G3DSA:3.90.180.10 | - | 40 | 101 | 4.00e-07 |
| 1 | g14023.t5 | PANTHER | PTHR43880:SF21 | S-(HYDROXYMETHYL)GLUTATHIONE DEHYDROGENASE | 1 | 99 | 0.00e+00 |
| 2 | g14023.t5 | PANTHER | PTHR43880 | ALCOHOL DEHYDROGENASE | 1 | 99 | 0.00e+00 |
| 3 | g14023.t5 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 1 | 64 | 2.76e-05 |
| 4 | g14023.t5 | SUPERFAMILY | SSF50129 | GroES-like | 50 | 100 | 0.00e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
